{ "type": "genome", "identifier": "GCF_027853245.1", "organism": "Atlantibacter subterranea", "title": "Atlantibacter subterranea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jahangirnagar University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027853245.1", "bioproject": "PRJNA224116", "biosample": "SAMN11606582", "wgs_master": "JAPTZM000000000.1", "refseq_category": "na", "taxid": "255519", "species_taxid": "255519", "organism_name": "Atlantibacter subterranea", "infraspecific_name": "strain=FRCl", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/14", "asm_name": "ASM2785324v1", "asm_submitter": "Jahangirnagar University", "gbrs_paired_asm": "GCA_027853245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/853/245/GCF_027853245.1_ASM2785324v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4775341", "genome_size_ungapped": "4774572", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "137", "contig_count": "137", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027853245.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "4585", "protein_coding_gene_count": "4449", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-14", "dateModified": "2023-01-14", "datePublished": "2023-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Atlantibacter subterranea" ], "sample_taxid": [ "255519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Oak Ridge, Tennessee" ], "sample_host_location_id": [], "data_size": "1.352 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4775341", "Number of Sequences": "137", "Longest Sequences (bp)": "1065418", "N50 (bp)": "584948", "Gap Ratio (%)": "0.016187", "GCcontent (%)": "55.0", "Number of CDSs": "4411", "Average Protein Length": "318.0", "Coding Ratio (%)": "88.1", "Number of rRNAs": "4", "Number of tRNAs": "65", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 86.4879, "matched_fragments": 1195, "total_fragments": 1565, 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"below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000409325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 81.8647, "matched_fragments": 821, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000319325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 81.8341, "matched_fragments": 832, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 81.7231, "matched_fragments": 824, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter 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"validated": true, "ani": 80.996, "matched_fragments": 836, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 80.8336, "matched_fragments": 794, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter vendiensis", "strain": "strain=type strain: CPO20170097", "accession": "GCA_943590815.1", "taxid": 2488306, "species_taxid": 2488306, "relation_to_type": "type", "validated": true, "ani": 80.7679, "matched_fragments": 748, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_000734955.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.2991, 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null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Atlantibacter", "subterranea" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }