{ "type": "genome", "identifier": "GCF_027886245.1", "organism": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "title": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppasala Univeristy & Jawaharlal Nehru University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027886245.1", "bioproject": "PRJNA224116", "biosample": "SAMN32724496", "wgs_master": "ANBR00000000.1", "refseq_category": "na", "taxid": "1226752", "species_taxid": "152142", "organism_name": "Mycolicibacterium holsaticum DSM 44478 = JCM 12374", "infraspecific_name": "strain=DSM 44478", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/17", "asm_name": "ASM2788624v1", "asm_submitter": "Uppasala Univeristy & Jawaharlal Nehru University", "gbrs_paired_asm": "GCA_027886245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/886/245/GCF_027886245.1_ASM2788624v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5603737", "genome_size_ungapped": "5603737", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027886245.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5384", "protein_coding_gene_count": "5259", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-17", "dateModified": "2023-01-17", "datePublished": "2023-01-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium holsaticum DSM 44478 = JCM 12374" ], "sample_taxid": [ "1226752" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.534 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5603737", "Number of Sequences": "45", "Longest Sequences (bp)": "1182357", "N50 (bp)": "529605", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "5322", "Average Protein Length": "323.9", "Coding Ratio (%)": "92.3", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium elephantis", "strain": "strain=DSM 44368", "accession": "GCA_004014805.1", "taxid": 81858, "species_taxid": 81858, "relation_to_type": "type", "validated": true, "ani": 87.1711, "matched_fragments": 1428, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 87.023, "matched_fragments": 1407, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 82.7164, "matched_fragments": 1165, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.5808, "matched_fragments": 1138, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.545, "matched_fragments": 1128, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 82.5425, "matched_fragments": 1140, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium malmesburyense", "strain": "strain=WCM 7299", "accession": "GCA_001050015.1", "taxid": 1566886, "species_taxid": 1566886, "relation_to_type": "type", "validated": true, "ani": 82.3099, "matched_fragments": 1164, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium komanii", "strain": "strain=GPK 1020", "accession": "GCA_001050035.1", "taxid": 1566885, "species_taxid": 1566885, "relation_to_type": "type", "validated": true, "ani": 82.2059, "matched_fragments": 1161, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium neumannii", "strain": "strain=CECT 8766", "accession": "GCA_002245615.1", "taxid": 2048551, "species_taxid": 2048551, "relation_to_type": "type", "validated": true, "ani": 82.0928, "matched_fragments": 1174, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium hassiacum", "strain": "strain=DSM 44199", "accession": "GCA_000300375.1", "taxid": 46351, "species_taxid": 46351, "relation_to_type": "type", "validated": true, "ani": 81.3504, "matched_fragments": 1050, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium hassiacum", "strain": "strain=DSM 44199", "accession": "GCA_000379865.1", "taxid": 46351, "species_taxid": 46351, "relation_to_type": "type", "validated": true, "ani": 81.321, "matched_fragments": 1072, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chubuense", "strain": "strain=DSM 44219", "accession": "GCA_002086595.1", "taxid": 1800, "species_taxid": 1800, "relation_to_type": "type", "validated": true, "ani": 80.7436, "matched_fragments": 973, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.6443, "matched_fragments": 947, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.5831, "matched_fragments": 949, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.119, "matched_fragments": 920, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0804, "matched_fragments": 923, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.9097, "matched_fragments": 837, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=ATCC 51131", "accession": "GCA_000974705.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.9077, "matched_fragments": 613, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=DSM 44243", "accession": "GCA_002101595.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 79.8808, "matched_fragments": 783, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 79.8603, "matched_fragments": 872, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=DSM 45166", "accession": "GCA_002101735.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 79.8301, "matched_fragments": 807, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 79.8203, "matched_fragments": 911, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=KUM060204T", "accession": "GCA_000759695.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 79.78, "matched_fragments": 782, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.7692, "matched_fragments": 838, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 79.697, "matched_fragments": 719, "total_fragments": 1852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis", "strain": "strain=H37Rv", "accession": "GCA_000195955.2", "taxid": 1773, "species_taxid": 1773, 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