{
    "type": "genome",
    "identifier": "GCF_027921805.1",
    "organism": "Nocardioides luteus",
    "title": "Nocardioides luteus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027921805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00253105",
        "wgs_master": "BSEL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1844",
        "species_taxid": "1844",
        "organism_name": "Nocardioides luteus",
        "infraspecific_name": "strain=VKM Ac-1246",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/19",
        "asm_name": "ASM2792180v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_027921805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/921/805/GCF_027921805.1_ASM2792180v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4956498",
        "genome_size_ungapped": "4954263",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027921805.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "4805",
        "protein_coding_gene_count": "4721",
        "non_coding_gene_count": "54",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-19",
    "dateModified": "2023-01-19",
    "datePublished": "2023-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardioides luteus"
        ],
        "sample_taxid": [
            "1844"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.327 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
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        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1243977",
        "N50 (bp)": "589111",
        "Gap Ratio (%)": "0.045677",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "4781",
        "Average Protein Length": "316.5",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardioides luteus",
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                "relation_to_type": "type",
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            {
                "organism_name": "Nocardioides albus",
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                "species_taxid": 1841,
                "relation_to_type": "type",
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                "ani": 88.2911,
                "matched_fragments": 1304,
                "total_fragments": 1645,
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                "status": "below_threshold"
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            {
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                "accession": "GCA_013408335.1",
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                "ani": 88.1909,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides albertanoniae",
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                "matched_fragments": 1281,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides nematodiphilus",
                "strain": "strain=R-N-C8",
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                "species_taxid": 2849669,
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                "matched_fragments": 646,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides panaciterrulae",
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                "accession": "GCA_013409645.1",
                "taxid": 661492,
                "species_taxid": 661492,
                "relation_to_type": "type",
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                "ani": 79.694,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides baculatus",
                "strain": "strain=G10",
                "accession": "GCA_016735675.1",
                "taxid": 2801337,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides soli",
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            },
            {
                "organism_name": "Nocardioides solisilvae",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Nocardioides malaquae",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardioides sambongensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardioides humilatus",
                "strain": "strain=BN130099",
                "accession": "GCA_008373755.1",
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                "species_taxid": 2607660,
                "relation_to_type": "type",
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                "ani": 79.4003,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides ganghwensis",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Nocardioides carbamazepini",
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                "accession": "GCA_024614185.1",
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                "species_taxid": 2854259,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
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}