{ "type": "genome", "identifier": "GCF_027922005.1", "organism": "Streptosporangium carneum", "title": "Streptosporangium carneum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027922005.1", "bioproject": "PRJNA224116", "biosample": "SAMD00253115", "wgs_master": "BSEV00000000.1", "refseq_category": "reference genome", "taxid": "47481", "species_taxid": "47481", "organism_name": "Streptosporangium carneum", "infraspecific_name": "strain=VKM Ac-2007", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/19", "asm_name": "ASM2792200v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_027922005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/005/GCF_027922005.1_ASM2792200v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9846716", "genome_size_ungapped": "9846194", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "184", "contig_count": "184", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027922005.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "8936", "protein_coding_gene_count": "8737", "non_coding_gene_count": "78", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-19", "dateModified": "2023-01-19", "datePublished": "2023-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptosporangium carneum" ], "sample_taxid": [ "47481" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "2.665 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 18.17, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9846716", "Number of Sequences": "184", "Longest Sequences (bp)": "1220526", "N50 (bp)": "279000", "Gap Ratio (%)": "0.005393", "GCcontent (%)": "70.5", "Number of CDSs": "8923", "Average Protein Length": "314.0", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptosporangium saharense", "strain": "strain=CECT 8840", "accession": "GCA_014203715.1", "taxid": 1706840, "species_taxid": 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"total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium pseudovulgare", "strain": "strain=JCM 3115", "accession": "GCA_014648055.1", "taxid": 35765, "species_taxid": 35765, "relation_to_type": "type", "validated": true, "ani": 83.2749, "matched_fragments": 1669, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 83.1428, "matched_fragments": 1609, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=NBRC 15558", "accession": "GCA_016863155.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 83.0094, "matched_fragments": 1528, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 82.9224, "matched_fragments": 1645, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.1636, "matched_fragments": 905, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.9357, "matched_fragments": 1396, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea spiralis", "strain": "strain=JCM 3286", "accession": "GCA_014648435.1", "taxid": 46182, "species_taxid": 46182, "relation_to_type": "type", "validated": true, "ani": 79.9197, "matched_fragments": 1525, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 79.5928, "matched_fragments": 1341, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 79.5667, "matched_fragments": 1374, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 79.5455, "matched_fragments": 1405, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 77.1338, "matched_fragments": 541, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 76.8011, "matched_fragments": 668, "total_fragments": 3218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora herbaricolor", "strain": "strain=JCM 4138", 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