{
    "type": "genome",
    "identifier": "GCF_027922025.1",
    "organism": "Herbiconiux flava",
    "title": "Herbiconiux flava",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027922025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00253116",
        "wgs_master": "BSEW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "881268",
        "species_taxid": "881268",
        "organism_name": "Herbiconiux flava",
        "infraspecific_name": "strain=VKM Ac-2058",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/19",
        "asm_name": "ASM2792202v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_027922025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/025/GCF_027922025.1_ASM2792202v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3840319",
        "genome_size_ungapped": "3840223",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027922025.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "3685",
        "protein_coding_gene_count": "3616",
        "non_coding_gene_count": "54",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-19",
    "dateModified": "2023-01-19",
    "datePublished": "2023-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Herbiconiux flava"
        ],
        "sample_taxid": [
            "881268"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.016 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3840319",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "2179451",
        "N50 (bp)": "2179451",
        "Gap Ratio (%)": "0.002500",
        "GCcontent (%)": "71.1",
        "Number of CDSs": "3656",
        "Average Protein Length": "324.7",
        "Coding Ratio (%)": "92.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Herbiconiux moechotypicola",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herbiconiux ginsengi",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 779,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Cnuibacter physcomitrellae",
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                "taxid": 1619308,
                "species_taxid": 1619308,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 706,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cnuibacter physcomitrellae",
                "strain": "strain=CGMCC 1.15041",
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                "species_taxid": 1619308,
                "relation_to_type": "type",
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                "ani": 81.1067,
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                "total_fragments": 1277,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter phaseoli",
                "strain": "strain=LPPA 982",
                "accession": "GCA_021922925.1",
                "taxid": 1734031,
                "species_taxid": 1734031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5886,
                "matched_fragments": 475,
                "total_fragments": 1277,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter zhangzhiyongii",
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                "accession": "GCA_014775655.1",
                "taxid": 2768071,
                "species_taxid": 2768071,
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                "matched_fragments": 492,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
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                "ani": 79.539,
                "matched_fragments": 557,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_021922985.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3984,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_002240635.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3896,
                "matched_fragments": 499,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013409865.1",
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                "matched_fragments": 1276,
                "total_fragments": 1277,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Herbiconiux",
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                "min_intra_species_ani": "95.35",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_015350805.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}