{ "type": "genome", "identifier": "GCF_027922185.1", "organism": "Maricaulis virginensis", "title": "Maricaulis virginensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027922185.1", "bioproject": "PRJNA224116", "biosample": "SAMD00253124", "wgs_master": "BSFE00000000.1", "refseq_category": "reference genome", "taxid": "144022", "species_taxid": "144022", "organism_name": "Maricaulis virginensis", "infraspecific_name": "strain=VKM B-1513", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/19", "asm_name": "ASM2792218v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_027922185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/185/GCF_027922185.1_ASM2792218v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3663049", "genome_size_ungapped": "3662854", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027922185.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "3526", "protein_coding_gene_count": "3457", "non_coding_gene_count": "50", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-19", "dateModified": "2023-01-19", "datePublished": "2023-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Maricaulis virginensis" ], "sample_taxid": [ "144022" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.010 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3663049", "Number of Sequences": "31", "Longest Sequences (bp)": "699316", "N50 (bp)": "328794", "Gap Ratio (%)": "0.005323", "GCcontent (%)": "65.1", "Number of CDSs": "3489", "Average Protein Length": "314.7", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maricaulis alexandrii", "strain": "strain=LZ-16-1", "accession": "GCA_005871165.1", "taxid": 2570354, "species_taxid": 2570354, "relation_to_type": "type", "validated": true, "ani": 81.8295, "matched_fragments": 749, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maricaulis maris", "strain": "strain=DSM 4734", "accession": "GCA_003634045.1", "taxid": 74318, "species_taxid": 74318, "relation_to_type": "type", "validated": true, "ani": 80.9171, "matched_fragments": 670, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maricaulis salignorans", "strain": "strain=DSM 16077", "accession": "GCA_900103475.1", "taxid": 144026, "species_taxid": 144026, "relation_to_type": "type", "validated": true, "ani": 78.9895, "matched_fragments": 516, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 78.1215, "matched_fragments": 356, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 78.0932, "matched_fragments": 327, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 78.074, "matched_fragments": 356, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda pacifica", "strain": "strain=P-1 km-3", "accession": "GCA_004793635.1", "taxid": 1133559, "species_taxid": 1133559, "relation_to_type": "type", "validated": true, "ani": 77.8995, "matched_fragments": 303, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda pacifica", "strain": "strain=CGMCC 1.11031", "accession": "GCA_014636415.1", "taxid": 1133559, "species_taxid": 1133559, "relation_to_type": "type", "validated": true, "ani": 77.8651, "matched_fragments": 302, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphobacterium indicum", "strain": "strain=2ED5", "accession": "GCA_003129605.1", "taxid": 2162714, "species_taxid": 2162714, "relation_to_type": "type", "validated": true, "ani": 77.7301, "matched_fragments": 264, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycocaulis alkaliphilus", "strain": "strain=CGMCC 1.12428", "accession": "GCA_014637625.1", "taxid": 1434191, "species_taxid": 1434191, "relation_to_type": "type", "validated": true, "ani": 77.5693, "matched_fragments": 261, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.5598, "matched_fragments": 114, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 76.4984, "matched_fragments": 160, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 76.4728, "matched_fragments": 136, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.093, "matched_fragments": 227, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.0556, "matched_fragments": 115, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 75.982, "matched_fragments": 123, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002707795.1", "gtdb_species": "s__Maricaulis sp002707795", "ani": 98.3554, "matched_fragments": 717, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.36", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.69", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_017642925.1", "gtdb_species": "s__Maricaulis sp017642925", "ani": 94.2699, "matched_fragments": 1062, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005871165.1", "gtdb_species": "s__Maricaulis sp005871165", "ani": 81.8397, "matched_fragments": 748, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016817355.1", "gtdb_species": "s__Maricaulis parjimensis", "ani": 81.6108, "matched_fragments": 707, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002694345.1", "gtdb_species": "s__Maricaulis sp002694345", "ani": 81.4951, "matched_fragments": 450, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015665295.1", "gtdb_species": "s__Maricaulis sp015665295", "ani": 81.0371, "matched_fragments": 643, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634045.1", "gtdb_species": "s__Maricaulis maris", "ani": 80.9197, "matched_fragments": 671, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000014745.1", "gtdb_species": "s__Maricaulis maris_A", "ani": 80.4603, "matched_fragments": 622, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905480005.1", "gtdb_species": "s__Maricaulis sp905480005", "ani": 80.227, "matched_fragments": 554, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017643475.1", "gtdb_species": "s__Maricaulis sp017643475", "ani": 78.767, "matched_fragments": 443, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 22.5, "optimum_ph": null, "genome_size": 3259946.333, "gc_content": 62.7, "coding_genes": 3075.333, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Maricaulis", "virginensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }