{
    "type": "genome",
    "identifier": "GCF_027922205.1",
    "organism": "Methylopila capsulata",
    "title": "Methylopila capsulata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027922205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00253125",
        "wgs_master": "BSFF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "61654",
        "species_taxid": "61654",
        "organism_name": "Methylopila capsulata",
        "infraspecific_name": "strain=VKM B-1606",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/19",
        "asm_name": "ASM2792220v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_027922205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/205/GCF_027922205.1_ASM2792220v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4137354",
        "genome_size_ungapped": "4137354",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027922205.1-RS_2024_05_19",
        "annotation_date": "2024-05-19",
        "total_gene_count": "3891",
        "protein_coding_gene_count": "3805",
        "non_coding_gene_count": "54",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-19",
    "dateModified": "2023-01-19",
    "datePublished": "2023-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylopila capsulata"
        ],
        "sample_taxid": [
            "61654"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.113 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4137354",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "1220848",
        "N50 (bp)": "1167841",
        "Gap Ratio (%)": "0.000024",
        "GCcontent (%)": "69.7",
        "Number of CDSs": "3862",
        "Average Protein Length": "319.6",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hansschlegelia beijingensis",
                "strain": "strain=DSM 25481",
                "accession": "GCA_014196425.1",
                "taxid": 1133344,
                "species_taxid": 1133344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0574,
                "matched_fragments": 727,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
                "strain": "strain=DSM 506",
                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3439,
                "matched_fragments": 519,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oharaeibacter diazotrophicus",
                "strain": "strain=SM30",
                "accession": "GCA_011317485.1",
                "taxid": 1920512,
                "species_taxid": 1920512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3435,
                "matched_fragments": 481,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium dankookense",
                "strain": "strain=DSM 22415",
                "accession": "GCA_022179165.1",
                "taxid": 560405,
                "species_taxid": 560405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1192,
                "matched_fragments": 490,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris sulfoviridis",
                "strain": "strain=DSM 729",
                "accession": "GCA_008630065.1",
                "taxid": 50712,
                "species_taxid": 50712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1092,
                "matched_fragments": 349,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium dankookense",
                "strain": "strain=SW08-7",
                "accession": "GCA_902141855.1",
                "taxid": 560405,
                "species_taxid": 560405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.093,
                "matched_fragments": 508,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium cerastii",
                "strain": "strain=DSM 23679",
                "accession": "GCA_022179125.1",
                "taxid": 932741,
                "species_taxid": 932741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0788,
                "matched_fragments": 500,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oharaeibacter diazotrophicus",
                "strain": "strain=DSM 102969",
                "accession": "GCA_004362745.1",
                "taxid": 1920512,
                "species_taxid": 1920512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0154,
                "matched_fragments": 571,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter tagetidis",
                "strain": "strain=DSM 11105",
                "accession": "GCA_014206845.1",
                "taxid": 60216,
                "species_taxid": 60216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8617,
                "matched_fragments": 461,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter tagetidis",
                "strain": "strain=ATCC 700314",
                "accession": "GCA_003667445.1",
                "taxid": 60216,
                "species_taxid": 60216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8578,
                "matched_fragments": 453,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium oryzihabitans",
                "strain": "strain=TER-1",
                "accession": "GCA_004004555.2",
                "taxid": 2499852,
                "species_taxid": 2499852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7692,
                "matched_fragments": 557,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium goesingense",
                "strain": "strain=DSM 21331",
                "accession": "GCA_022179225.1",
                "taxid": 243690,
                "species_taxid": 243690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7393,
                "matched_fragments": 382,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes piscinae",
                "strain": "strain=DSM 19946",
                "accession": "GCA_003258855.1",
                "taxid": 444923,
                "species_taxid": 444923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6534,
                "matched_fragments": 405,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lutibaculum baratangense",
                "strain": "strain=AMV1",
                "accession": "GCA_000496075.1",
                "taxid": 1358440,
                "species_taxid": 1358440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6436,
                "matched_fragments": 352,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
                "taxid": 2583531,
                "species_taxid": 2583531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.641,
                "matched_fragments": 546,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus reniformis",
                "strain": "strain=CGMCC 1.12919",
                "accession": "GCA_014640075.1",
                "taxid": 1494448,
                "species_taxid": 1494448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6179,
                "matched_fragments": 401,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
                "strain": "strain=DSM 17168",
                "accession": "GCA_022179325.1",
                "taxid": 315478,
                "species_taxid": 315478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6005,
                "matched_fragments": 528,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium aeschynomenes",
                "strain": "strain=83002",
                "accession": "GCA_013178945.1",
                "taxid": 2734909,
                "species_taxid": 2734909,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5495,
                "matched_fragments": 425,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes roseus",
                "strain": "strain=DSM 5909",
                "accession": "GCA_003258865.1",
                "taxid": 29409,
                "species_taxid": 29409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4987,
                "matched_fragments": 415,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes elegans",
                "strain": "strain=DSM 11907",
                "accession": "GCA_016653355.1",
                "taxid": 29408,
                "species_taxid": 29408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4774,
                "matched_fragments": 483,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes elegans",
                "strain": "strain=DSM 11907",
                "accession": "GCA_003258805.1",
                "taxid": 29408,
                "species_taxid": 29408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.476,
                "matched_fragments": 429,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium crusticola",
                "strain": "strain=MIMD6",
                "accession": "GCA_003574465.1",
                "taxid": 1697972,
                "species_taxid": 1697972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4713,
                "matched_fragments": 525,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium crusticola",
                "strain": "strain=KCTC 52305",
                "accession": "GCA_022179145.1",
                "taxid": 1697972,
                "species_taxid": 1697972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4343,
                "matched_fragments": 542,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lichenibacterium minor",
                "strain": "strain=RmlP026",
                "accession": "GCA_004137685.1",
                "taxid": 2316528,
                "species_taxid": 2316528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3974,
                "matched_fragments": 401,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lichenibacterium ramalinae",
                "strain": "strain=RmlP001",
                "accession": "GCA_004137085.1",
                "taxid": 2316527,
                "species_taxid": 2316527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0924,
                "matched_fragments": 417,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016907975.1",
                "gtdb_species": "s__Methylopila capsulata",
                "ani": 99.9987,
                "matched_fragments": 1370,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000526315.1",
                "gtdb_species": "s__Methylopila sp000526315",
                "ani": 93.5578,
                "matched_fragments": 1196,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002897035.1",
                "gtdb_species": "s__Methylopila sp002897035",
                "ani": 91.515,
                "matched_fragments": 1186,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003241695.1",
                "gtdb_species": "s__Hansschlegelia sp003241695",
                "ani": 81.3535,
                "matched_fragments": 810,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902168115.1",
                "gtdb_species": "s__Hansschlegelia sp902168115",
                "ani": 81.266,
                "matched_fragments": 769,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196425.1",
                "gtdb_species": "s__Hansschlegelia beijingensis",
                "ani": 81.1157,
                "matched_fragments": 721,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004103825.1",
                "gtdb_species": "s__Hansschlegelia zhihuaiae",
                "ani": 81.0892,
                "matched_fragments": 805,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.243,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 29.0,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylopila",
        "capsulata"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}