{ "type": "genome", "identifier": "GCF_027922225.1", "organism": "Azotobacter vinelandii", "title": "Azotobacter vinelandii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027922225.1", "bioproject": "PRJNA224116", "biosample": "SAMD00253126", "wgs_master": "BSFG00000000.1", "refseq_category": "na", "taxid": "354", "species_taxid": "354", "organism_name": "Azotobacter vinelandii", "infraspecific_name": "strain=VKM B-1617", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/19", "asm_name": "ASM2792222v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_027922225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/225/GCF_027922225.1_ASM2792222v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5200078", "genome_size_ungapped": "5199380", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "136", "contig_count": "136", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027922225.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "4858", "protein_coding_gene_count": "4647", "non_coding_gene_count": "62", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-19", "dateModified": "2023-01-19", "datePublished": "2023-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Azotobacter vinelandii" ], "sample_taxid": [ "354" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5200078", "Number of Sequences": "136", "Longest Sequences (bp)": "389010", "N50 (bp)": "100204", "Gap Ratio (%)": "0.013423", "GCcontent (%)": "65.7", "Number of CDSs": "4689", "Average Protein Length": "316.5", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 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88.4218, "matched_fragments": 1102, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 82.8188, "matched_fragments": 725, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 82.6815, "matched_fragments": 779, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 82.4414, "matched_fragments": 771, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.0876, "matched_fragments": 717, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flexibilis", "strain": "strain=ATCC 29606", "accession": "GCA_900155995.1", "taxid": 706570, "species_taxid": 706570, "relation_to_type": "type", "validated": true, "ani": 81.3545, "matched_fragments": 609, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 81.2233, "matched_fragments": 801, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 81.2211, "matched_fragments": 713, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.2116, "matched_fragments": 693, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas indica", "strain": "strain=NBRC 103045", "accession": "GCA_002091635.1", "taxid": 137658, "species_taxid": 137658, "relation_to_type": "type", "validated": true, "ani": 81.1804, "matched_fragments": 752, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 81.0409, "matched_fragments": 676, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000380335.1", "gtdb_species": "s__Azotobacter vinelandii", "ani": 99.992, "matched_fragments": 1659, "total_fragments": 1665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Azotobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_009363155.1", "gtdb_species": "s__Azotobacter salinestris", "ani": 89.9833, "matched_fragments": 1224, "total_fragments": 1665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Azotobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004339665.1", "gtdb_species": "s__Azotobacter chroococcum", "ani": 89.4657, "matched_fragments": 1190, "total_fragments": 1665, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Azotobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.27", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900110885.1", "gtdb_species": "s__Azotobacter beijerinckii", "ani": 88.4157, "matched_fragments": 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