{ "type": "genome", "identifier": "GCF_027922265.1", "organism": "Hansschlegelia plantiphila", "title": "Hansschlegelia plantiphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_027922265.1", "bioproject": "PRJNA224116", "biosample": "SAMD00253128", "wgs_master": "BSFI00000000.1", "refseq_category": "reference genome", "taxid": "374655", "species_taxid": "374655", "organism_name": "Hansschlegelia plantiphila", "infraspecific_name": "strain=VKM B-2347", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/19", "asm_name": "ASM2792226v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_027922265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/265/GCF_027922265.1_ASM2792226v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3820903", "genome_size_ungapped": "3820903", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_027922265.1-RS_2024_05_19", "annotation_date": "2024-05-19", "total_gene_count": "3562", "protein_coding_gene_count": "3474", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-19", "dateModified": "2023-01-19", "datePublished": "2023-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Hansschlegelia plantiphila" ], "sample_taxid": [ "374655" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.039 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3820903", "Number of Sequences": "23", "Longest Sequences (bp)": "716959", "N50 (bp)": "377795", "Gap Ratio (%)": "0.000079", "GCcontent (%)": "68.0", "Number of CDSs": "3523", "Average Protein Length": "322.9", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hansschlegelia beijingensis", "strain": "strain=DSM 25481", "accession": "GCA_014196425.1", "taxid": 1133344, "species_taxid": 1133344, "relation_to_type": "type", "validated": true, "ani": 82.0095, "matched_fragments": 739, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 78.2334, "matched_fragments": 363, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 78.1358, "matched_fragments": 306, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter sonchi", "strain": "strain=VKM B-3145", "accession": "GCA_018390695.1", "taxid": 1937790, "species_taxid": 1937790, "relation_to_type": "type", "validated": true, "ani": 78.13, "matched_fragments": 430, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 78.1236, "matched_fragments": 394, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 78.0382, "matched_fragments": 398, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 78.0212, "matched_fragments": 427, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 78.0168, "matched_fragments": 334, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 77.958, "matched_fragments": 403, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 77.9576, "matched_fragments": 396, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter defluvii", "strain": "strain=VKM B-2789", "accession": "GCA_018390605.1", "taxid": 1282440, "species_taxid": 1282440, "relation_to_type": "type", "validated": true, "ani": 77.8983, "matched_fragments": 373, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 77.8416, "matched_fragments": 381, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 77.823, "matched_fragments": 436, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.8207, "matched_fragments": 470, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.8092, "matched_fragments": 355, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 77.7928, "matched_fragments": 444, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 77.6943, "matched_fragments": 444, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 77.6631, "matched_fragments": 318, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter cathodiphilus", "strain": "strain=S-12", "accession": "GCA_003008515.1", "taxid": 1868589, "species_taxid": 1868589, "relation_to_type": "type", "validated": true, "ani": 77.6245, "matched_fragments": 339, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 77.6093, "matched_fragments": 408, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 77.5749, "matched_fragments": 418, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 77.5079, "matched_fragments": 363, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 77.4859, "matched_fragments": 405, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium goesingense", "strain": "strain=DSM 21331", "accession": "GCA_022179225.1", "taxid": 243690, "species_taxid": 243690, "relation_to_type": "type", "validated": true, "ani": 77.4751, "matched_fragments": 308, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_016653355.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 77.4272, "matched_fragments": 413, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 77.3496, "matched_fragments": 361, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidamorphus gemmatus", "strain": "strain=DSM 19345", "accession": "GCA_004346195.1", "taxid": 747076, "species_taxid": 747076, "relation_to_type": "type", "validated": true, "ani": 77.3378, "matched_fragments": 252, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrovibrio terrae", "strain": "strain=K5", "accession": "GCA_007197755.1", "taxid": 2594003, "species_taxid": 2594003, "relation_to_type": "type", "validated": true, "ani": 76.988, "matched_fragments": 142, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 75.4552, "matched_fragments": 51, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Quadrisphaera setariae", "strain": "strain=DD2A", "accession": "GCA_008041935.1", "taxid": 2593304, "species_taxid": 2593304, "relation_to_type": "type", "validated": true, "ani": 74.8721, "matched_fragments": 138, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugosimonospora africana", "strain": "strain=NBRC 104875", "accession": "GCA_016862975.1", "taxid": 556532, "species_taxid": 556532, "relation_to_type": "type", "validated": true, "ani": 74.8053, "matched_fragments": 145, "total_fragments": 1262, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004310425.1", "gtdb_species": "s__Hansschlegelia quercus", "ani": 82.4037, "matched_fragments": 795, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196425.1", "gtdb_species": "s__Hansschlegelia beijingensis", "ani": 81.9817, "matched_fragments": 742, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004103825.1", "gtdb_species": "s__Hansschlegelia zhihuaiae", "ani": 81.5939, "matched_fragments": 751, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907975.1", "gtdb_species": "s__Methylopila capsulata", "ani": 81.5639, "matched_fragments": 741, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003241695.1", "gtdb_species": "s__Hansschlegelia sp003241695", "ani": 81.5283, "matched_fragments": 771, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902168115.1", "gtdb_species": "s__Hansschlegelia sp902168115", "ani": 81.5144, "matched_fragments": 693, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000526315.1", "gtdb_species": "s__Methylopila sp000526315", "ani": 81.4277, "matched_fragments": 751, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000384475.1", "gtdb_species": "s__Hansschlegelia sp000384475", "ani": 81.3753, "matched_fragments": 747, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002897035.1", "gtdb_species": "s__Methylopila sp002897035", "ani": 81.1586, "matched_fragments": 718, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007197755.1", "gtdb_species": "s__Ferrovibrio terrae", "ani": 77.0045, "matched_fragments": 141, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Ferrovibrionales;f__Ferrovibrionaceae;g__Ferrovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903851655.1", "gtdb_species": "s__CAIMFV01 sp903851655", "ani": 76.5856, "matched_fragments": 110, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__CAIMFV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017991315.1", "gtdb_species": "s__Ferrovibrio sp017991315", "ani": 76.3965, "matched_fragments": 91, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Ferrovibrionales;f__Ferrovibrionaceae;g__Ferrovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009694165.1", "gtdb_species": "s__SHVP01 sp009694165", "ani": 75.8355, "matched_fragments": 57, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__SHVP01;f__SHVP01;g__SHVP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018401435.1", "gtdb_species": "s__M30B51 sp018401435", "ani": 75.0802, "matched_fragments": 86, "total_fragments": 1262, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__M30B51", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.14, "cell_length": 0.06, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 28.75, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hansschlegelia", "plantiphila" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }