{
    "type": "genome",
    "identifier": "GCF_027922305.1",
    "organism": "Methylopila jiangsuensis",
    "title": "Methylopila jiangsuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027922305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00253130",
        "wgs_master": "BSFK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "586230",
        "species_taxid": "586230",
        "organism_name": "Methylopila jiangsuensis",
        "infraspecific_name": "strain=VKM B-2555",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/19",
        "asm_name": "ASM2792230v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_027922305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/922/305/GCF_027922305.1_ASM2792230v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3715153",
        "genome_size_ungapped": "3715048",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027922305.1-RS_2024_05_19",
        "annotation_date": "2024-05-19",
        "total_gene_count": "3526",
        "protein_coding_gene_count": "3430",
        "non_coding_gene_count": "55",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-19",
    "dateModified": "2023-01-19",
    "datePublished": "2023-01-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylopila jiangsuensis"
        ],
        "sample_taxid": [
            "586230"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.998 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3715153",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "1164072",
        "N50 (bp)": "985174",
        "Gap Ratio (%)": "0.002826",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "3511",
        "Average Protein Length": "315.7",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hansschlegelia beijingensis",
                "strain": "strain=DSM 25481",
                "accession": "GCA_014196425.1",
                "taxid": 1133344,
                "species_taxid": 1133344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.756,
                "matched_fragments": 649,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oharaeibacter diazotrophicus",
                "strain": "strain=SM30",
                "accession": "GCA_011317485.1",
                "taxid": 1920512,
                "species_taxid": 1920512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4904,
                "matched_fragments": 464,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya koreensis",
                "strain": "strain=Jip08",
                "accession": "GCA_023016525.1",
                "taxid": 266121,
                "species_taxid": 266121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4294,
                "matched_fragments": 477,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga thermotolerans",
                "strain": "strain=HR1",
                "accession": "GCA_009363855.1",
                "taxid": 2651334,
                "species_taxid": 2651334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3931,
                "matched_fragments": 316,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oharaeibacter diazotrophicus",
                "strain": "strain=DSM 102969",
                "accession": "GCA_004362745.1",
                "taxid": 1920512,
                "species_taxid": 1920512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.379,
                "matched_fragments": 517,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter oligotrophicus",
                "strain": "strain=29k",
                "accession": "GCA_008364685.1",
                "taxid": 2607286,
                "species_taxid": 2607286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3012,
                "matched_fragments": 457,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=DSM 101465",
                "accession": "GCA_018398355.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2608,
                "matched_fragments": 330,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=CGMCC 1.15283",
                "accession": "GCA_014641535.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2474,
                "matched_fragments": 330,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter dioxanivorans",
                "strain": "strain=YN2",
                "accession": "GCA_016807805.1",
                "taxid": 2528964,
                "species_taxid": 2528964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2452,
                "matched_fragments": 478,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=DSM 101465",
                "accession": "GCA_014201415.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2101,
                "matched_fragments": 331,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga lenta",
                "strain": "strain=SM9",
                "accession": "GCA_020532555.1",
                "taxid": 2881337,
                "species_taxid": 2881337,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1775,
                "matched_fragments": 320,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phreatobacter cathodiphilus",
                "strain": "strain=S-12",
                "accession": "GCA_003008515.1",
                "taxid": 1868589,
                "species_taxid": 1868589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1759,
                "matched_fragments": 391,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis albus",
                "strain": "strain=L22",
                "accession": "GCA_015904235.1",
                "taxid": 2793297,
                "species_taxid": 2793297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.175,
                "matched_fragments": 452,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris sulfoviridis",
                "strain": "strain=DSM 729",
                "accession": "GCA_008630065.1",
                "taxid": 50712,
                "species_taxid": 50712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.096,
                "matched_fragments": 391,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pleomorphomonas koreensis",
                "strain": "strain=DSM 23070",
                "accession": "GCA_000425185.1",
                "taxid": 257440,
                "species_taxid": 257440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0833,
                "matched_fragments": 393,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylorubrum salsuginis",
                "strain": "strain=CGMCC 1.6474",
                "accession": "GCA_900114375.1",
                "taxid": 414703,
                "species_taxid": 414703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9983,
                "matched_fragments": 443,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tarhaniae",
                "strain": "strain=DSM 25844",
                "accession": "GCA_001043955.1",
                "taxid": 1187852,
                "species_taxid": 1187852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8585,
                "matched_fragments": 457,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bosea robiniae",
                "strain": "strain=DSM 26672",
                "accession": "GCA_900102525.1",
                "taxid": 1036780,
                "species_taxid": 1036780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7989,
                "matched_fragments": 369,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium aquaticum",
                "strain": "strain=DSM 16371",
                "accession": "GCA_001043915.1",
                "taxid": 270351,
                "species_taxid": 270351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7775,
                "matched_fragments": 441,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium goesingense",
                "strain": "strain=DSM 21331",
                "accession": "GCA_022179225.1",
                "taxid": 243690,
                "species_taxid": 243690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7615,
                "matched_fragments": 361,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes elegans",
                "strain": "strain=DSM 11907",
                "accession": "GCA_003258805.1",
                "taxid": 29408,
                "species_taxid": 29408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7334,
                "matched_fragments": 406,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
                "strain": "strain=DSM 17168",
                "accession": "GCA_022179325.1",
                "taxid": 315478,
                "species_taxid": 315478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7286,
                "matched_fragments": 497,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter agilis",
                "strain": "strain=LMG 16336",
                "accession": "GCA_021730435.1",
                "taxid": 47492,
                "species_taxid": 47492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6273,
                "matched_fragments": 407,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia granuli",
                "strain": "strain=Ko04",
                "accession": "GCA_000380505.1",
                "taxid": 363259,
                "species_taxid": 363259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6249,
                "matched_fragments": 309,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium crusticola",
                "strain": "strain=KCTC 52305",
                "accession": "GCA_022179145.1",
                "taxid": 1697972,
                "species_taxid": 1697972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6173,
                "matched_fragments": 510,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium crusticola",
                "strain": "strain=MIMD6",
                "accession": "GCA_003574465.1",
                "taxid": 1697972,
                "species_taxid": 1697972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5874,
                "matched_fragments": 491,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acuticoccus mangrovi",
                "strain": "strain=B2012",
                "accession": "GCA_016411865.1",
                "taxid": 2796142,
                "species_taxid": 2796142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0745,
                "matched_fragments": 357,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016907975.1",
                "gtdb_species": "s__Methylopila capsulata",
                "ani": 82.7831,
                "matched_fragments": 796,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000526315.1",
                "gtdb_species": "s__Methylopila sp000526315",
                "ani": 82.4532,
                "matched_fragments": 787,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002897035.1",
                "gtdb_species": "s__Methylopila sp002897035",
                "ani": 82.0037,
                "matched_fragments": 758,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Methylopila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003241695.1",
                "gtdb_species": "s__Hansschlegelia sp003241695",
                "ani": 81.3896,
                "matched_fragments": 733,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902168115.1",
                "gtdb_species": "s__Hansschlegelia sp902168115",
                "ani": 80.9253,
                "matched_fragments": 660,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004103825.1",
                "gtdb_species": "s__Hansschlegelia zhihuaiae",
                "ani": 80.7999,
                "matched_fragments": 705,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196425.1",
                "gtdb_species": "s__Hansschlegelia beijingensis",
                "ani": 80.7779,
                "matched_fragments": 647,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004310425.1",
                "gtdb_species": "s__Hansschlegelia quercus",
                "ani": 80.219,
                "matched_fragments": 628,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Hansschlegelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196835.1",
                "gtdb_species": "s__Aureimonas pseudogalii",
                "ani": 77.4352,
                "matched_fragments": 377,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003565775.1",
                "gtdb_species": "s__SKGQ01 sp003565775",
                "ani": 75.8759,
                "matched_fragments": 57,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SKGQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.243,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.0,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylopila",
        "jiangsuensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}