{
    "type": "genome",
    "identifier": "GCF_027923585.1",
    "organism": "Philodulcilactobacillus myokoensis",
    "title": "Philodulcilactobacillus myokoensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology, Oyama College",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027923585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00451300",
        "wgs_master": "BRPL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2929573",
        "species_taxid": "2929573",
        "organism_name": "Philodulcilactobacillus myokoensis",
        "infraspecific_name": "strain=WR16-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/12",
        "asm_name": "ASM2792358v1",
        "asm_submitter": "National Institute of Technology, Oyama College",
        "gbrs_paired_asm": "GCA_027923585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/923/585/GCF_027923585.1_ASM2792358v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1672155",
        "genome_size_ungapped": "1672155",
        "gc_percent": "34.000000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027923585.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "1682",
        "protein_coding_gene_count": "1590",
        "non_coding_gene_count": "81",
        "pubmed_id": "37342988"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-12",
    "dateModified": "2022-12-12",
    "datePublished": "2022-12-12",
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        "sample_organism": [
            "Philodulcilactobacillus myokoensis"
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        "sample_taxid": [
            "2929573"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Niigata, Myoko"
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        "sample_host_location_id": [],
        "data_size": "0.463 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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        "Number of Sequences": "4",
        "Longest Sequences (bp)": "1415584",
        "N50 (bp)": "1415584",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.8",
        "Number of CDSs": "1611",
        "Average Protein Length": "302.0",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "15",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
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                "organism_name": "Apilactobacillus apisilvae",
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                "accession": "GCA_023380225.1",
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                "species_taxid": 2923364,
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            {
                "organism_name": "Apilactobacillus timberlakei",
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                "species_taxid": 2008380,
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                "validated": true,
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                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus quenuiae",
                "strain": "strain=HV_6",
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                "species_taxid": 2008377,
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                "ani": 77.7562,
                "matched_fragments": 92,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus ozensis",
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                "accession": "GCA_001435995.1",
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                "species_taxid": 866801,
                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_003627035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "num_clustered_genomes": 9,
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            },
            {
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                "gtdb_species": "s__Apilactobacillus kunkeei_B",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001435995.1",
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                "mean_intra_species_ani": "99.83",
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                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001281175.1",
                "gtdb_species": "s__Apilactobacillus apinorum",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_005930915.1",
                "gtdb_species": "s__Apilactobacillus kunkeei_D",
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                "mean_intra_species_ani": "98.78",
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                "num_clustered_genomes": 5,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Philodulcilactobacillus",
        "myokoensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}