{
    "type": "genome",
    "identifier": "GCF_027923765.1",
    "organism": "Pseudodesulfovibrio nedwellii",
    "title": "Pseudodesulfovibrio nedwellii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Microbiology Laboratory Department of Marine Science and Technology Department of Marine Science and Technology, Fukui Prefectural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_027923765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00521554",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2973072",
        "species_taxid": "2973072",
        "organism_name": "Pseudodesulfovibrio nedwellii",
        "infraspecific_name": "strain=SYK",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/23",
        "asm_name": "ASM2792376v1",
        "asm_submitter": "Microbiology Laboratory Department of Marine Science and Technology Department of Marine Science and Technology, Fukui Prefectural University",
        "gbrs_paired_asm": "GCA_027923765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/923/765/GCF_027923765.1_ASM2792376v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3762062",
        "genome_size_ungapped": "3762062",
        "gc_percent": "49.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_027923765.1-RS_2024_07_01",
        "annotation_date": "2024-07-01",
        "total_gene_count": "3540",
        "protein_coding_gene_count": "3447",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-23",
    "dateModified": "2022-11-23",
    "datePublished": "2022-11-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudodesulfovibrio nedwellii"
        ],
        "sample_taxid": [
            "2973072"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Fukui, Mihama, Lake Hiruga"
        ],
        "sample_host_location_id": [],
        "data_size": "1.071 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3762062",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3762062",
        "N50 (bp)": "3762062",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.4",
        "Number of CDSs": "3463",
        "Average Protein Length": "319.5",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudodesulfovibrio sediminis",
                "strain": "strain=SF6",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio profundus",
                "strain": "strain=500-1",
                "accession": "GCA_900217235.1",
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                "species_taxid": 57320,
                "relation_to_type": "type",
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                "ani": 78.5518,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio indicus",
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                "species_taxid": 1716143,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio hydrargyri",
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                "accession": "GCA_001874525.1",
                "taxid": 2125990,
                "species_taxid": 2125990,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 275,
                "total_fragments": 1254,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio indicus",
                "strain": "strain=DSM 101483",
                "accession": "GCA_004365595.1",
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                "species_taxid": 1716143,
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                "validated": true,
                "ani": 78.1307,
                "matched_fragments": 296,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio cashew",
                "strain": "strain=SRB007",
                "accession": "GCA_009762795.1",
                "taxid": 2678688,
                "species_taxid": 2678688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0417,
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                "total_fragments": 1254,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio piezophilus",
                "strain": "strain=type strain: C1TLV30",
                "accession": "GCA_000341895.1",
                "taxid": 879567,
                "species_taxid": 879567,
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                "matched_fragments": 206,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio alkaliphilus",
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                "species_taxid": 2661613,
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                "total_fragments": 1254,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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            {
                "accession": "GCA_016744135.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900217235.1",
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            {
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            {
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            },
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    },
    "_bac2feature": {
        "phenotypes": null,
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        "doubling_h": -0.398,
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        "bacillus_cell_shape": null,
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    "_genome_taxon": [
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        "nedwellii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}