{ "type": "genome", "identifier": "GCF_028023555.1", "organism": "Thalassococcus lentus", "title": "Thalassococcus lentus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028023555.1", "bioproject": "PRJNA224116", "biosample": "SAMN32648701", "wgs_master": "JAQIOY000000000.1", "refseq_category": "reference genome", "taxid": "1210524", "species_taxid": "1210524", "organism_name": "Thalassococcus lentus", "infraspecific_name": "strain=KCTC 32084", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/26", "asm_name": "ASM2802355v1", "asm_submitter": "Shenzhen University", "gbrs_paired_asm": "GCA_028023555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/023/555/GCF_028023555.1_ASM2802355v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3883063", "genome_size_ungapped": "3883063", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028023555.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3789", "protein_coding_gene_count": "3724", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-26", "dateModified": "2023-01-26", "datePublished": "2023-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassococcus lentus" ], "sample_taxid": [ "1210524" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "1.097 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3883063", "Number of Sequences": "18", "Longest Sequences (bp)": "1043167", "N50 (bp)": "750821", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "3775", "Average Protein Length": "313.1", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 77.7619, "matched_fragments": 375, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.638, "matched_fragments": 327, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6222, "matched_fragments": 327, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 77.4881, "matched_fragments": 248, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 77.4536, "matched_fragments": 256, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.4309, "matched_fragments": 158, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola algae", "strain": "strain=Lw-13e", "accession": "GCA_003590145.2", "taxid": 1537215, "species_taxid": 1537215, "relation_to_type": "type", "validated": true, "ani": 77.3404, "matched_fragments": 168, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 77.3143, "matched_fragments": 232, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter mobilis", "strain": "strain=DSM 23403", "accession": "GCA_900106635.1", "taxid": 379347, "species_taxid": 379347, "relation_to_type": "type", "validated": true, "ani": 77.3078, "matched_fragments": 164, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 77.2944, "matched_fragments": 199, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 77.2766, "matched_fragments": 258, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter marinus", "strain": "strain=PX7", "accession": "GCA_003313245.1", "taxid": 1977320, "species_taxid": 1977320, "relation_to_type": "type", "validated": true, "ani": 77.2478, "matched_fragments": 225, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 77.2424, "matched_fragments": 202, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonocella pacifica", "strain": "strain=DSM 29316", "accession": "GCA_900111875.1", "taxid": 871651, "species_taxid": 871651, "relation_to_type": "type", "validated": true, "ani": 77.215, "matched_fragments": 131, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita pacifica", "strain": "strain=DSM 29329", "accession": "GCA_003054175.1", "taxid": 1267769, "species_taxid": 1267769, "relation_to_type": "type", "validated": true, "ani": 77.2039, "matched_fragments": 221, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.1772, "matched_fragments": 132, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter mobilis", "strain": "strain=NBRC101030", "accession": "GCA_001681715.1", "taxid": 379347, "species_taxid": 379347, "relation_to_type": "type", "validated": true, "ani": 77.1676, "matched_fragments": 165, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=AD8", "accession": "GCA_008930655.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 77.1649, "matched_fragments": 231, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter scottomollicae", "strain": "strain=DSM 25328", "accession": "GCA_003003215.1", "taxid": 483013, "species_taxid": 483013, "relation_to_type": "type", "validated": true, "ani": 77.1639, "matched_fragments": 181, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.1472, "matched_fragments": 195, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia isoporae", "strain": "strain=DSM 26433", "accession": "GCA_004346865.1", "taxid": 647720, "species_taxid": 647720, "relation_to_type": "type", "validated": true, "ani": 77.1343, "matched_fragments": 155, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 77.1287, "matched_fragments": 223, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 77.1225, "matched_fragments": 230, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.122, "matched_fragments": 180, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.0654, "matched_fragments": 190, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.0622, "matched_fragments": 188, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=DSM 22011", "accession": "GCA_003259905.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 77.0566, "matched_fragments": 231, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.0238, "matched_fragments": 186, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.015, "matched_fragments": 198, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.0071, "matched_fragments": 191, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 76.9251, "matched_fragments": 198, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.8061, "matched_fragments": 115, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.776, "matched_fragments": 114, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.7641, "matched_fragments": 143, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 76.6526, "matched_fragments": 137, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900176475.1", "gtdb_species": "s__Tropicibacter naphthalenivorans", "ani": 77.8171, "matched_fragments": 360, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tropicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019218285.1", "gtdb_species": "s__DP3N28-2 sp019218285", "ani": 77.7709, "matched_fragments": 374, "total_fragments": 1286, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__DP3N28-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018224955.1", "gtdb_species": "s__Aestuariicoccus sp018224955", "ani": 77.7577, "matched_fragments": 294, "total_fragments": 1286, "gtdb_taxonomy": 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