{
    "type": "genome",
    "identifier": "GCF_028120825.1",
    "organism": "Vibrio cholerae",
    "title": "Vibrio cholerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Center for Biotechnology Information",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028120825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN32378349",
        "wgs_master": "DAMYAF000000000.1",
        "refseq_category": "na",
        "taxid": "666",
        "species_taxid": "666",
        "organism_name": "Vibrio cholerae",
        "infraspecific_name": "na",
        "isolate": "NCTC8021",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/27",
        "asm_name": "PDT001589074.1",
        "asm_submitter": "National Center for Biotechnology Information",
        "gbrs_paired_asm": "GCA_028120825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/120/825/GCF_028120825.1_PDT001589074.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4009603",
        "genome_size_ungapped": "4009603",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "283",
        "contig_count": "283",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_028120825.1-RS_2024_04_20",
        "annotation_date": "2024-04-20",
        "total_gene_count": "3775",
        "protein_coding_gene_count": "3604",
        "non_coding_gene_count": "79",
        "pubmed_id": "30286803"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-27",
    "dateModified": "2023-01-27",
    "datePublished": "2023-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio cholerae"
        ],
        "sample_taxid": [
            "666"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Queensland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.151 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4009603",
        "Number of Sequences": "283",
        "Longest Sequences (bp)": "114377",
        "N50 (bp)": "35807",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.7",
        "Number of CDSs": "3498",
        "Average Protein Length": "324.3",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Vibrio cholerae",
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                "species_taxid": 666,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Vibrio paracholerae",
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                "accession": "GCA_017169525.1",
                "taxid": 650003,
                "species_taxid": 650003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.9779,
                "matched_fragments": 1068,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio tarriae",
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                "accession": "GCA_002216685.1",
                "taxid": 2014742,
                "species_taxid": 2014742,
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                "matched_fragments": 1051,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio metoecus",
                "strain": "strain=OP3H",
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                "taxid": 1481663,
                "species_taxid": 1481663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4879,
                "matched_fragments": 977,
                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio mimicus",
                "strain": "strain=NCTC11435",
                "accession": "GCA_900460385.1",
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                "species_taxid": 674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.681,
                "matched_fragments": 967,
                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio mimicus",
                "strain": "strain=CAIM 602",
                "accession": "GCA_000338875.1",
                "taxid": 674,
                "species_taxid": 674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6505,
                "matched_fragments": 959,
                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=JCM 19500",
                "accession": "GCA_009938205.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4693,
                "matched_fragments": 291,
                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
                "accession": "GCA_008830195.1",
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                "species_taxid": 1381081,
                "relation_to_type": "type",
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                "ani": 78.4305,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio fortis",
                "strain": "strain=LMG 21557",
                "accession": "GCA_024347475.1",
                "taxid": 212667,
                "species_taxid": 212667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3522,
                "matched_fragments": 263,
                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
                "species_taxid": 691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2478,
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                "total_fragments": 1211,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001471585.2",
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                "total_fragments": 1211,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 1544,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009665255.1",
                "gtdb_species": "s__Vibrio metoecus_B",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "mean_intra_species_ani": "98.11",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000696385.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
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                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_019048845.1",
                "gtdb_species": "s__Vibrio sp000176715",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "mean_intra_species_ani": "96.20",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000338875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": 0.215,
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        "growth_tmp": 36.667,
        "optimum_tmp": 27.5,
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        "genome_size": 4002869.661,
        "gc_content": 47.33,
        "coding_genes": 3711.745,
        "rRNA16S_genes": 8.125,
        "tRNA_genes": 99.238,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
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        "facultative_respiration": 1.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Vibrio",
        "cholerae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}