{ "type": "genome", "identifier": "GCF_028416535.1", "organism": "Aquibacillus koreensis", "title": "Aquibacillus koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028416535.1", "bioproject": "PRJNA224116", "biosample": "SAMN28856362", "wgs_master": "JAMQJZ000000000.1", "refseq_category": "na", "taxid": "279446", "species_taxid": "279446", "organism_name": "Aquibacillus koreensis", "infraspecific_name": "strain=JCM 12387", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/02", "asm_name": "ASM2841653v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_028416535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/416/535/GCF_028416535.1_ASM2841653v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4328474", "genome_size_ungapped": "4328183", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-01", "total_gene_count": "4337", "protein_coding_gene_count": "4166", "non_coding_gene_count": "131", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-02", "dateModified": "2023-02-02", "datePublished": "2023-02-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquibacillus koreensis" ], "sample_taxid": [ "279446" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.228 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4328474", "Number of Sequences": "56", "Longest Sequences (bp)": "562581", "N50 (bp)": "190688", "Gap Ratio (%)": "0.006723", "GCcontent (%)": "36.8", "Number of CDSs": "4218", "Average Protein Length": "282.9", "Coding Ratio (%)": "82.7", "Number of rRNAs": "8", "Number of tRNAs": "104", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquibacillus koreensis", "strain": "strain=JCM 12387", "accession": "GCA_025154055.1", "taxid": 279446, "species_taxid": 279446, "relation_to_type": "type", "validated": true, "ani": 99.9825, "matched_fragments": 1392, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquibacillus saliphilus", "strain": "strain=KHM2", "accession": "GCA_020404745.1", "taxid": 1909422, "species_taxid": 1909422, "relation_to_type": "type", "validated": true, "ani": 78.0182, "matched_fragments": 225, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus kalidii", "strain": "strain=HU2P27", "accession": "GCA_014280935.1", "taxid": 2762597, "species_taxid": 2762597, "relation_to_type": "type", "validated": true, "ani": 77.945, "matched_fragments": 242, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus ryukyuensis", "strain": "strain=DSM 15140", "accession": "GCA_003315295.1", "taxid": 200904, "species_taxid": 200904, "relation_to_type": "type", "validated": true, "ani": 77.521, "matched_fragments": 132, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus halophilus", "strain": "strain=B6B", "accession": "GCA_009649745.1", "taxid": 930132, "species_taxid": 930132, "relation_to_type": "type", "validated": true, "ani": 77.4947, "matched_fragments": 233, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus zengyii", "strain": "strain=X-1125", "accession": "GCA_003268595.1", "taxid": 2213194, "species_taxid": 2213194, "relation_to_type": "type", "validated": true, "ani": 77.4643, "matched_fragments": 163, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Radiobacillus deserti", "strain": "strain=TKL69", "accession": "GCA_007301515.1", "taxid": 2594883, "species_taxid": 2594883, "relation_to_type": "type", "validated": true, "ani": 77.3431, "matched_fragments": 153, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus jordanicus", "strain": "strain=GSFE11", "accession": "GCA_022095695.1", "taxid": 2867266, "species_taxid": 2867266, "relation_to_type": "type", "validated": true, "ani": 77.3344, "matched_fragments": 75, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus albus", "strain": "strain=DSM 23711", "accession": "GCA_016908325.1", "taxid": 1168171, "species_taxid": 1168171, "relation_to_type": "type", "validated": true, "ani": 77.3216, "matched_fragments": 222, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saliterribacillus persicus", "strain": "strain=DSM 27696", "accession": "GCA_003337485.1", "taxid": 930114, "species_taxid": 930114, "relation_to_type": "type", "validated": true, "ani": 77.2932, "matched_fragments": 150, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus saliphilus", "strain": "strain=YIM 91119", "accession": "GCA_010994085.1", "taxid": 543890, "species_taxid": 543890, "relation_to_type": "type", "validated": true, "ani": 77.2428, "matched_fragments": 117, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halotolerans", "strain": "strain=CGMCC 1.12408", "accession": "GCA_014637405.1", "taxid": 1274357, "species_taxid": 1274357, "relation_to_type": "type", "validated": true, "ani": 77.0751, "matched_fragments": 93, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salirhabdus euzebyi", "strain": "strain=DSM 19612", "accession": "GCA_014207435.1", "taxid": 394506, "species_taxid": 394506, "relation_to_type": "type", "validated": true, "ani": 76.8723, "matched_fragments": 89, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacillus marinus", "strain": "strain=DSM 16465", "accession": "GCA_000425225.1", "taxid": 273164, "species_taxid": 273164, "relation_to_type": "type", "validated": true, "ani": 76.7917, "matched_fragments": 72, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia salsa", "strain": "strain=IBRC-M10078", "accession": "GCA_900104555.1", "taxid": 930152, "species_taxid": 930152, "relation_to_type": "type", "validated": true, "ani": 76.7544, "matched_fragments": 75, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus alimentarius", "strain": "strain=J18", "accession": "GCA_000709085.1", "taxid": 698769, "species_taxid": 698769, "relation_to_type": "type", "validated": true, "ani": 76.4344, "matched_fragments": 61, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogracilibacillus auburnensis", "strain": "strain=DSM 28556", "accession": "GCA_003201975.1", "taxid": 1494959, "species_taxid": 1494959, "relation_to_type": "type", "validated": true, "ani": 75.8752, "matched_fragments": 58, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014280935.1", "gtdb_species": "s__HU2P27 sp014280935", "ani": 77.9466, "matched_fragments": 242, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__HU2P27", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001368815.1", "gtdb_species": "s__Paraliobacillus sp001368815", "ani": 77.5797, "matched_fragments": 129, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus", "ani_circumscription_radius": 95.0, 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