{
    "type": "genome",
    "identifier": "GCF_028416635.1",
    "organism": "Baekduia alba",
    "title": "Baekduia alba",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Leibniz Institute DSMZ",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028416635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN31859443",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2997333",
        "species_taxid": "2997333",
        "organism_name": "Baekduia alba",
        "infraspecific_name": "strain=0141_2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/02",
        "asm_name": "ASM2841663v1",
        "asm_submitter": "Leibniz Institute DSMZ",
        "gbrs_paired_asm": "GCA_028416635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/416/635/GCF_028416635.1_ASM2841663v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5863246",
        "genome_size_ungapped": "5863246",
        "gc_percent": "73.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_028416635.1-RS_2024_06_10",
        "annotation_date": "2024-06-10",
        "total_gene_count": "5869",
        "protein_coding_gene_count": "5754",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-02",
    "dateModified": "2023-02-02",
    "datePublished": "2023-02-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Baekduia alba"
        ],
        "sample_taxid": [
            "2997333"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Muelhausan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.529 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5863246",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5863246",
        "N50 (bp)": "5863246",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.9",
        "Number of CDSs": "5887",
        "Average Protein Length": "308.6",
        "Coding Ratio (%)": "93.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Baekduia soli",
                "strain": "strain=BR7-21",
                "accession": "GCA_007970665.1",
                "taxid": 496014,
                "species_taxid": 496014,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6514,
                "matched_fragments": 1007,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0575,
                "matched_fragments": 782,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capillimicrobium parvum",
                "strain": "strain=0166_1",
                "accession": "GCA_021172045.1",
                "taxid": 2884022,
                "species_taxid": 2884022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0571,
                "matched_fragments": 825,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter arvalis",
                "strain": "strain=DSM 23288",
                "accession": "GCA_014199525.1",
                "taxid": 912552,
                "species_taxid": 912552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.809,
                "matched_fragments": 858,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter woesei",
                "strain": "strain=DSM 14684",
                "accession": "GCA_000025265.1",
                "taxid": 191495,
                "species_taxid": 191495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5419,
                "matched_fragments": 898,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solirubrobacter pauli",
                "strain": "strain=DSM 14954",
                "accession": "GCA_003633755.1",
                "taxid": 166793,
                "species_taxid": 166793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1697,
                "matched_fragments": 868,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1111,
                "matched_fragments": 709,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter americanus",
                "strain": "strain=DSM 16676",
                "accession": "GCA_000420025.1",
                "taxid": 588672,
                "species_taxid": 588672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7981,
                "matched_fragments": 634,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter minatonensis",
                "strain": "strain=DSM 18081",
                "accession": "GCA_000519325.1",
                "taxid": 298163,
                "species_taxid": 298163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7332,
                "matched_fragments": 727,
                "total_fragments": 1954,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000688095.1",
                "gtdb_species": "s__Baekduia sp000688095",
                "ani": 88.7522,
                "matched_fragments": 1393,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000424625.1",
                "gtdb_species": "s__Baekduia woesei_A",
                "ani": 85.5995,
                "matched_fragments": 1314,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007970665.1",
                "gtdb_species": "s__Baekduia soli",
                "ani": 81.7087,
                "matched_fragments": 998,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016215085.1",
                "gtdb_species": "s__Baekduia sp016215085",
                "ani": 80.9284,
                "matched_fragments": 657,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017084525.1",
                "gtdb_species": "s__Baekduia sp017084525",
                "ani": 79.1704,
                "matched_fragments": 839,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005883905.1",
                "gtdb_species": "s__AC-49 sp005883905",
                "ani": 78.1777,
                "matched_fragments": 483,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__AC-49",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005888335.1",
                "gtdb_species": "s__VAWY01 sp005888335",
                "ani": 77.9676,
                "matched_fragments": 841,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__VAWY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018268595.1",
                "gtdb_species": "s__Conexibacter sp018268595",
                "ani": 77.9093,
                "matched_fragments": 661,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Conexibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017916475.1",
                "gtdb_species": "s__Patulibacter sp017916475",
                "ani": 76.968,
                "matched_fragments": 716,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Patulibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015655225.1",
                "gtdb_species": "s__Conexibacter sp015655225",
                "ani": 76.5905,
                "matched_fragments": 488,
                "total_fragments": 1954,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Conexibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Baekduia",
        "alba"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}