{ "type": "genome", "identifier": "GCF_028463845.1", "organism": "Gimibacter soli", "title": "Gimibacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028463845.1", "bioproject": "PRJNA224116", "biosample": "SAMN32765976", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3024400", "species_taxid": "3024400", "organism_name": "Gimibacter soli", "infraspecific_name": "strain=6D33", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/05", "asm_name": "ASM2846384v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_028463845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/463/845/GCF_028463845.1_ASM2846384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3591884", "genome_size_ungapped": "3591784", "gc_percent": "61.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028463845.1-RS_2024_06_30", "annotation_date": "2024-06-30", "total_gene_count": "3301", "protein_coding_gene_count": "3244", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-05", "dateModified": "2023-02-05", "datePublished": "2023-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Gimibacter soli" ], "sample_taxid": [ "3024400" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhuhai" ], "sample_host_location_id": [], "data_size": "1.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3591784", "Number of Sequences": "1", "Longest Sequences (bp)": "3591784", "N50 (bp)": "3591784", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.8", "Number of CDSs": "3264", "Average Protein Length": "335.8", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kordiimonas marina", "strain": "strain=A6E486", "accession": "GCA_023006325.1", "taxid": 2872312, "species_taxid": 2872312, "relation_to_type": "type", "validated": true, "ani": 78.1054, "matched_fragments": 354, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordiimonas lacus", "strain": "strain=S3-22", "accession": "GCA_001550055.1", "taxid": 637679, "species_taxid": 637679, "relation_to_type": "type", "validated": true, "ani": 77.7376, "matched_fragments": 249, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordiimonas lacus", "strain": "strain=CGMCC 1.9109", "accession": "GCA_900101935.1", "taxid": 637679, "species_taxid": 637679, "relation_to_type": "type", "validated": true, "ani": 77.6815, "matched_fragments": 246, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordiimonas gwangyangensis", "strain": "strain=DSM 19435", "accession": "GCA_000375545.1", "taxid": 288022, "species_taxid": 288022, "relation_to_type": "type", "validated": true, "ani": 77.663, "matched_fragments": 249, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordiimonas 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"GCA_016583875.1", "taxid": 1086, "species_taxid": 1086, "relation_to_type": "type", "validated": true, "ani": 76.6545, "matched_fragments": 123, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_014197775.1", "taxid": 1086, "species_taxid": 1086, "relation_to_type": "type", "validated": true, "ani": 76.4741, "matched_fragments": 125, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_004341375.1", "taxid": 1086, "species_taxid": 1086, "relation_to_type": "type", "validated": true, "ani": 76.4524, "matched_fragments": 125, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis microcysteis", "strain": "strain=Z10-6", "accession": "GCA_012274265.1", "taxid": 2484145, "species_taxid": 2484145, 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"below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.0255, "matched_fragments": 80, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 75.9898, "matched_fragments": 79, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 75.9888, "matched_fragments": 80, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus thiocyanatus", "strain": "strain=ATCC 700171", "accession": "GCA_900156255.1", "taxid": 34006, "species_taxid": 34006, "relation_to_type": "type", "validated": true, "ani": 75.987, "matched_fragments": 80, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 75.7181, "matched_fragments": 59, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_006226495.1", "gtdb_species": "s__Kordiimonas sp006226495", "ani": 78.4104, "matched_fragments": 383, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001550055.1", "gtdb_species": "s__Kordiimonas lacus", "ani": 77.7229, "matched_fragments": 249, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000375545.1", "gtdb_species": "s__Kordiimonas gwangyangensis", "ani": 77.663, "matched_fragments": 249, "total_fragments": 1197, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas", "ani_circumscription_radius": 95.0, 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