{ "type": "genome", "identifier": "GCF_028532485.1", "organism": "Iamia majanohamensis", "title": "Iamia majanohamensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The university of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028532485.1", "bioproject": "PRJNA224116", "biosample": "SAMN32952419", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "467976", "species_taxid": "467976", "organism_name": "Iamia majanohamensis", "infraspecific_name": "strain=DSM 19957", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/07", "asm_name": "ASM2853248v1", "asm_submitter": "The university of Hong Kong", "gbrs_paired_asm": "GCA_028532485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/532/485/GCF_028532485.1_ASM2853248v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4576919", "genome_size_ungapped": "4576919", "gc_percent": "75.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-10", "total_gene_count": "4339", "protein_coding_gene_count": "4271", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-07", "dateModified": "2023-02-07", "datePublished": "2023-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Iamia majanohamensis" ], "sample_taxid": [ "467976" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" ], "sample_host_location_id": [], "data_size": "1.178 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4576919", "Number of Sequences": "1", "Longest Sequences (bp)": "4576919", "N50 (bp)": "4576919", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.9", "Number of CDSs": "4340", "Average Protein Length": "322.7", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.6517, "matched_fragments": 511, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.6297, "matched_fragments": 535, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 77.1488, "matched_fragments": 342, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.2267, "matched_fragments": 421, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.2179, "matched_fragments": 303, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 75.8984, "matched_fragments": 233, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavus", "strain": "strain=RP1", "accession": "GCA_001997295.1", "taxid": 1610493, "species_taxid": 1610493, "relation_to_type": "type", "validated": true, "ani": 75.5939, "matched_fragments": 117, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavus", "strain": "strain=RP1", "accession": "GCA_900107385.1", "taxid": 1610493, "species_taxid": 1610493, "relation_to_type": "type", "validated": true, "ani": 75.552, "matched_fragments": 118, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus aquimaris", "strain": "strain=NSG39", "accession": "GCA_001997345.1", "taxid": 1332264, "species_taxid": 1332264, "relation_to_type": "type", "validated": true, "ani": 75.5325, "matched_fragments": 144, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 75.3731, "matched_fragments": 329, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 75.2969, "matched_fragments": 352, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus siccatus", "strain": "strain=DSM 45419", "accession": "GCA_900103785.1", "taxid": 1137991, "species_taxid": 1137991, "relation_to_type": "type", "validated": true, "ani": 75.2894, "matched_fragments": 431, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 75.2513, "matched_fragments": 436, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora palomenae", "strain": "strain=DSM 102131", "accession": "GCA_007829925.1", "taxid": 1461247, "species_taxid": 1461247, "relation_to_type": "type", "validated": true, "ani": 75.2155, "matched_fragments": 408, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=DSM 15626", "accession": "GCA_014207795.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 75.2109, "matched_fragments": 248, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomycetospora cinnamomea", "strain": "strain=DSM 45771", "accession": "GCA_003096675.1", "taxid": 663609, "species_taxid": 663609, "relation_to_type": "type", "validated": true, "ani": 75.1916, "matched_fragments": 475, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sandramycini", "strain": "strain=ATCC 39419", "accession": "GCA_013131805.1", "taxid": 60450, "species_taxid": 60450, "relation_to_type": "type", "validated": true, "ani": 75.1708, "matched_fragments": 249, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus xinjiangensis", "strain": "strain=DSM 22857", "accession": "GCA_002934625.1", "taxid": 512762, "species_taxid": 512762, "relation_to_type": "type", "validated": true, "ani": 75.1624, "matched_fragments": 340, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus parvatiensis", "strain": "strain=RL", "accession": "GCA_000252835.2", "taxid": 456163, "species_taxid": 456163, "relation_to_type": "type", "validated": true, "ani": 74.9857, "matched_fragments": 77, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellella taiwanensis", "strain": "strain=JCM 13381", "accession": "GCA_003012795.1", "taxid": 347535, "species_taxid": 347535, "relation_to_type": "type", "validated": true, "ani": 74.8008, "matched_fragments": 76, "total_fragments": 1525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012730075.1", "gtdb_species": "s__JAAYBP01 sp012730075", "ani": 80.4093, "matched_fragments": 545, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAYBP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019048865.1", "gtdb_species": "s__Aquihabitans sp019048865", "ani": 78.7368, "matched_fragments": 768, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012513855.1", "gtdb_species": "s__JAAZBK01 sp012513855", "ani": 78.1161, "matched_fragments": 391, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAZBK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016185275.1", "gtdb_species": "s__JACPNX01 sp016185275", "ani": 78.0819, "matched_fragments": 460, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JACPNX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016702505.1", "gtdb_species": "s__JAAZBK01 sp016702505", "ani": 77.8919, "matched_fragments": 341, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAZBK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 77.7426, "matched_fragments": 532, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009650215.1", "gtdb_species": "s__Actinomarinicola tropica", "ani": 77.6666, "matched_fragments": 508, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019247975.1", "gtdb_species": "s__JAFBAD01 sp019247975", "ani": 77.6594, "matched_fragments": 333, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAFBAD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013694495.1", "gtdb_species": "s__JACDCH01 sp013694495", "ani": 77.5698, "matched_fragments": 419, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__JACDCH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016794585.1", "gtdb_species": "s__JAEUJM01 sp016794585", "ani": 77.4527, "matched_fragments": 627, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAEUJM01;g__JAEUJM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007121465.1", "gtdb_species": "s__SKKL01 sp007121465", "ani": 77.3971, "matched_fragments": 322, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__SKKL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004366205.1", "gtdb_species": "s__SIRW01 sp004366205", "ani": 77.387, "matched_fragments": 482, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SIRW01;g__SIRW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016781105.1", "gtdb_species": "s__JADDRA01 sp016781105", "ani": 77.3245, "matched_fragments": 360, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__JADDRA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902805555.1", "gtdb_species": "s__CADCSY01 sp902805555", "ani": 77.0856, "matched_fragments": 368, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__CADCSY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002861595.1", "gtdb_species": "s__GCA-2861595 sp002861595", "ani": 77.069, "matched_fragments": 256, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__GCA-2861595;g__GCA-2861595", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003962875.1", "gtdb_species": "s__AWTP1-35 sp003962875", "ani": 76.8999, "matched_fragments": 338, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903873135.1", "gtdb_species": "s__SXMI01 sp903873135", "ani": 76.6707, "matched_fragments": 324, "total_fragments": 1525, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.161, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 29.0, "optimum_ph": 7.0, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Iamia", "majanohamensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }