{
    "type": "genome",
    "identifier": "GCF_028538915.1",
    "organism": "Phocaeicola vulgatus ATCC 8482",
    "title": "Phocaeicola vulgatus ATCC 8482",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ben Gurion University of the Negev",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028538915.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30220829",
        "wgs_master": "JANSWM000000000.1",
        "refseq_category": "na",
        "taxid": "435590",
        "species_taxid": "821",
        "organism_name": "Phocaeicola vulgatus ATCC 8482",
        "infraspecific_name": "strain=ATCC 8482",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/07",
        "asm_name": "ASM2853891v1",
        "asm_submitter": "Ben Gurion University of the Negev",
        "gbrs_paired_asm": "GCA_028538915.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/538/915/GCF_028538915.1_ASM2853891v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5005209",
        "genome_size_ungapped": "5005209",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "133",
        "contig_count": "133",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-10",
        "total_gene_count": "4170",
        "protein_coding_gene_count": "3930",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-07",
    "dateModified": "2023-02-07",
    "datePublished": "2023-02-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phocaeicola vulgatus ATCC 8482"
        ],
        "sample_taxid": [
            "435590"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.429 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5005209",
        "Number of Sequences": "133",
        "Longest Sequences (bp)": "204078",
        "N50 (bp)": "108860",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "3954",
        "Average Protein Length": "367.4",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Phocaeicola vulgatus",
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                "species_taxid": 821,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "accession": "GCA_016766915.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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                "species_taxid": 357276,
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                "validated": true,
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            {
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                "species_taxid": 357276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3003,
                "matched_fragments": 1279,
                "total_fragments": 1610,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola dorei",
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                "accession": "GCA_025146415.1",
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                "species_taxid": 357276,
                "relation_to_type": "type",
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                "ani": 95.2509,
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                "total_fragments": 1610,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola sartorii",
                "strain": "strain=DSM 21941",
                "accession": "GCA_024622025.1",
                "taxid": 671267,
                "species_taxid": 671267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4247,
                "matched_fragments": 1077,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI 5482",
                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1306,
                "matched_fragments": 247,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_025147485.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.143,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1804,
                "matched_fragments": 211,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        },
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                "accession": "GCF_000012825.1",
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                "total_fragments": 1610,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "min_intra_species_ani": "95.43",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.359,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "97.27",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000614185.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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            },
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            },
            {
                "accession": "GCA_902388365.1",
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        ]
    },
    "_bac2feature": {
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        "cell_length": -0.523,
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        "growth_tmp": 37.0,
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        "genome_size": 2530631.0,
        "gc_content": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Phocaeicola",
        "vulgatus",
        "ATCC",
        "8482"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}