{
    "type": "genome",
    "identifier": "GCF_028539255.1",
    "organism": "Agathobacter ruminis",
    "title": "Agathobacter ruminis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ben Gurion University of the Negev",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028539255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30220824",
        "wgs_master": "JANSWH000000000.1",
        "refseq_category": "na",
        "taxid": "1712665",
        "species_taxid": "1712665",
        "organism_name": "Agathobacter ruminis",
        "infraspecific_name": "strain=DSM 29029",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/07",
        "asm_name": "ASM2853925v1",
        "asm_submitter": "Ben Gurion University of the Negev",
        "gbrs_paired_asm": "GCA_028539255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/539/255/GCF_028539255.1_ASM2853925v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2887935",
        "genome_size_ungapped": "2887935",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "105",
        "contig_count": "105",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-29",
        "total_gene_count": "2702",
        "protein_coding_gene_count": "2604",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-07",
    "dateModified": "2023-02-07",
    "datePublished": "2023-02-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agathobacter ruminis"
        ],
        "sample_taxid": [
            "1712665"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.821 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2887935",
        "Number of Sequences": "105",
        "Longest Sequences (bp)": "308531",
        "N50 (bp)": "70798",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "2651",
        "Average Protein Length": "328.6",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Agathobacter ruminis",
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                "accession": "GCA_002735305.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudobutyrivibrio ruminis",
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                "accession": "GCA_900218035.1",
                "taxid": 46206,
                "species_taxid": 46206,
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                "validated": true,
                "ani": 78.9921,
                "matched_fragments": 54,
                "total_fragments": 915,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium oxidoreducens",
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                "species_taxid": 1732,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "species_taxid": 301302,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia inulinivorans",
                "strain": "strain=DSM 16841",
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                "species_taxid": 360807,
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                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
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                "accession": "GCA_900537995.1",
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                "species_taxid": 166486,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Roseburia intestinalis",
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                "accession": "GCA_025151715.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
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                "accession": "GCA_000156535.1",
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                "matched_fragments": 80,
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            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_002735305.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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    "_bac2feature": {
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    "quality": 3,
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}