{ "type": "genome", "identifier": "GCF_028553765.1", "organism": "Paracoccus stylophorae", "title": "Paracoccus stylophorae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028553765.1", "bioproject": "PRJNA224116", "biosample": "SAMN17208933", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "659350", "species_taxid": "659350", "organism_name": "Paracoccus stylophorae", "infraspecific_name": "strain=LMG25392", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/08", "asm_name": "ASM2855376v1", "asm_submitter": "Georg-August-University Goettingen", "gbrs_paired_asm": "GCA_028553765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/553/765/GCF_028553765.1_ASM2855376v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3642172", "genome_size_ungapped": "3642172", "gc_percent": "66.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-11", "total_gene_count": "3579", "protein_coding_gene_count": "3484", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-08", "dateModified": "2023-02-08", "datePublished": "2023-02-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus stylophorae" ], "sample_taxid": [ "659350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Taiwan" ], "sample_host_location_id": [], "data_size": "0.984 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3642172", "Number of Sequences": "2", "Longest Sequences (bp)": "3634760", "N50 (bp)": "3634760", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "3554", "Average Protein Length": "314.6", "Coding Ratio (%)": "92.1", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 83.4178, "matched_fragments": 693, 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"below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 82.3641, "matched_fragments": 652, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus alcaliphilus", "strain": "strain=DSM 8512", "accession": "GCA_900110285.1", "taxid": 34002, "species_taxid": 34002, "relation_to_type": "type", "validated": true, "ani": 82.3379, "matched_fragments": 657, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aestuarii", "strain": "strain=DSM 19484", "accession": "GCA_003594815.1", "taxid": 453842, "species_taxid": 453842, "relation_to_type": "type", "validated": true, "ani": 82.2954, "matched_fragments": 616, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 82.0697, "matched_fragments": 628, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=CMB17", "accession": "GCA_004310385.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 82.0639, "matched_fragments": 631, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 81.9432, "matched_fragments": 644, "total_fragments": 1213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": 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