{ "type": "genome", "identifier": "GCF_028595285.1", "organism": "Erythrobacter fulvus", "title": "Erythrobacter fulvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028595285.1", "bioproject": "PRJNA224116", "biosample": "SAMN31359163", "wgs_master": "JAQQXQ000000000.1", "refseq_category": "reference genome", "taxid": "2987523", "species_taxid": "2987523", "organism_name": "Erythrobacter fulvus", "infraspecific_name": "strain=sf7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/11", "asm_name": "ASM2859528v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_028595285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/595/285/GCF_028595285.1_ASM2859528v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3111689", "genome_size_ungapped": "3111679", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028595285.1-RS_2024_09_13", "annotation_date": "2024-09-13", "total_gene_count": "3011", "protein_coding_gene_count": "2934", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-11", "dateModified": "2023-02-11", "datePublished": "2023-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter fulvus" ], "sample_taxid": [ "2987523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: llsan" ], "sample_host_location_id": [], "data_size": "0.862 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3111689", "Number of Sequences": "20", "Longest Sequences (bp)": "592975", "N50 (bp)": "291474", "Gap Ratio (%)": "0.000321", "GCcontent (%)": "64.0", "Number of CDSs": "2961", "Average Protein Length": "318.5", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSM 17193", "accession": "GCA_002155305.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 85.0795, "matched_fragments": 806, "total_fragments": 1030, "ani_threshold": 95, 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"Erythrobacter tepidarius", "strain": "strain=DSM 10594", "accession": "GCA_002155695.1", "taxid": 60454, "species_taxid": 60454, "relation_to_type": "type", "validated": true, "ani": 83.899, "matched_fragments": 765, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 83.7971, "matched_fragments": 786, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter colymbi", "strain": "strain=JCM 18338", "accession": "GCA_002155685.1", "taxid": 1161202, "species_taxid": 1161202, "relation_to_type": "type", "validated": true, "ani": 83.5196, "matched_fragments": 784, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 82.8719, "matched_fragments": 756, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 82.8243, "matched_fragments": 770, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 79.445, "matched_fragments": 471, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 79.1556, "matched_fragments": 443, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 79.052, "matched_fragments": 396, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.8605, "matched_fragments": 412, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, 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