{ "type": "genome", "identifier": "GCF_028595325.1", "organism": "Janthinobacterium fluminis", "title": "Janthinobacterium fluminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028595325.1", "bioproject": "PRJNA224116", "biosample": "SAMN31359168", "wgs_master": "JAQQXR000000000.1", "refseq_category": "reference genome", "taxid": "2987524", "species_taxid": "2987524", "organism_name": "Janthinobacterium fluminis", "infraspecific_name": "strain=hw3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/11", "asm_name": "ASM2859532v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_028595325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/595/325/GCF_028595325.1_ASM2859532v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5868506", "genome_size_ungapped": "5868506", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028595325.1-RS_2024_03_20", "annotation_date": "2024-03-20", "total_gene_count": "5128", "protein_coding_gene_count": "4995", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-11", "dateModified": "2023-02-11", "datePublished": "2023-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Janthinobacterium fluminis" ], "sample_taxid": [ "2987524" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: llsan" ], "sample_host_location_id": [], "data_size": "1.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.41, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5868506", "Number of Sequences": "35", "Longest Sequences (bp)": "1335786", "N50 (bp)": "542198", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "4998", "Average Protein Length": "350.5", "Coding Ratio (%)": "89.5", "Number of rRNAs": "0", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 82.5587, "matched_fragments": 1048, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium agaricidamnosum", "strain": "strain=DSM 9628", "accession": "GCA_000723165.1", "taxid": 55508, "species_taxid": 55508, "relation_to_type": "type", "validated": true, "ani": 82.5516, "matched_fragments": 1083, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium agaricidamnosum", "strain": "strain=NBRC 102515", "accession": "GCA_001571185.1", "taxid": 55508, "species_taxid": 55508, "relation_to_type": "type", "validated": true, "ani": 82.5096, "matched_fragments": 1075, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, "species_taxid": 2758568, "relation_to_type": "type", "validated": true, "ani": 82.3876, "matched_fragments": 1047, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas apoptosis", "strain": "strain=LX47W", "accession": "GCA_014042355.1", "taxid": 2758570, "species_taxid": 2758570, "relation_to_type": "type", "validated": true, "ani": 82.2625, "matched_fragments": 1049, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium lividum", "strain": "strain=NCTC9796", "accession": "GCA_900451145.1", "taxid": 29581, "species_taxid": 29581, "relation_to_type": "suspected-type", "validated": true, "ani": 82.2158, "matched_fragments": 1140, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium psychrotolerans", "strain": "strain=S3-2", "accession": "GCA_001677885.1", "taxid": 1747903, "species_taxid": 1747903, "relation_to_type": "type", "validated": true, "ani": 82.1993, "matched_fragments": 1093, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": "type", "validated": true, "ani": 82.1667, "matched_fragments": 1090, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium violaceinigrum", "strain": "strain=FT13W", "accession": "GCA_009208555.1", "taxid": 2654252, "species_taxid": 2654252, "relation_to_type": "type", "validated": true, "ani": 82.1617, "matched_fragments": 1195, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 82.1518, "matched_fragments": 1124, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium lividum", "strain": "strain=ATCC 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"taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 81.3928, "matched_fragments": 898, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 81.2504, "matched_fragments": 1075, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.2204, "matched_fragments": 796, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia polaris", "strain": "strain=RP-1-19", "accession": "GCA_012927275.1", "taxid": 2728846, "species_taxid": 2728846, "relation_to_type": "type", "validated": true, "ani": 80.9372, "matched_fragments": 808, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 80.8841, "matched_fragments": 1053, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9298, "matched_fragments": 236, "total_fragments": 1942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 75.7285, 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.41, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000344615.1", "gtdb_species": "s__Janthinobacterium sp000344615", "ani": 87.4094, "matched_fragments": 1389, "total_fragments": 1942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Janthinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114705.1", "gtdb_species": "s__Rugamonas rubra", "ani": 83.8557, "matched_fragments": 1286, "total_fragments": 1942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rugamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000381565.1", "gtdb_species": "s__Duganella sp000381565", "ani": 82.6753, "matched_fragments": 1120, "total_fragments": 1942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.03", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000723165.1", "gtdb_species": "s__Janthinobacterium agaricidamnosum", "ani": 82.5177, "matched_fragments": 1088, "total_fragments": 1942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Janthinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", 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