{ "type": "genome", "identifier": "GCF_028596025.1", "organism": "Mucilaginibacter jinjuensis", "title": "Mucilaginibacter jinjuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences, Rural Development Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028596025.1", "bioproject": "PRJNA224116", "biosample": "SAMN33013692", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1176721", "species_taxid": "1176721", "organism_name": "Mucilaginibacter jinjuensis", "infraspecific_name": "strain=KACC 16571", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/12", "asm_name": "ASM2859602v1", "asm_submitter": "National Institute of Agricultural Sciences, Rural Development Administration", "gbrs_paired_asm": "GCA_028596025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/596/025/GCF_028596025.1_ASM2859602v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6157393", "genome_size_ungapped": "6157393", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028596025.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "5338", "protein_coding_gene_count": "5264", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-12", "dateModified": "2023-02-12", "datePublished": "2023-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter jinjuensis" ], "sample_taxid": [ "1176721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeongsangnam-do, Jinju-si" ], "sample_host_location_id": [], "data_size": "1.741 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6157393", "Number of Sequences": "1", "Longest Sequences (bp)": "6157393", "N50 (bp)": "6157393", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "5231", "Average Protein Length": "340.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 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"ani": 77.7454, "matched_fragments": 312, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.716, "matched_fragments": 362, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.5049, "matched_fragments": 369, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.4766, "matched_fragments": 330, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 77.4169, "matched_fragments": 348, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.3634, "matched_fragments": 262, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.3369, "matched_fragments": 305, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 77.3056, "matched_fragments": 318, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.2976, "matched_fragments": 267, "total_fragments": 2052, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903644075.1", "gtdb_species": "s__Mucilaginibacter sp903644075", "ani": 86.6153, "matched_fragments": 1146, "total_fragments": 2052, "gtdb_taxonomy": 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