{ "type": "genome", "identifier": "GCF_028609885.1", "organism": "Corynebacterium jeikeium", "title": "Corynebacterium jeikeium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uni Bielefeld", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028609885.1", "bioproject": "PRJNA224116", "biosample": "SAMN13404533", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "38289", "species_taxid": "38289", "organism_name": "Corynebacterium jeikeium", "infraspecific_name": "strain=DSM 7171", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/13", "asm_name": "ASM2860988v1", "asm_submitter": "Uni Bielefeld", "gbrs_paired_asm": "GCA_028609885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/609/885/GCF_028609885.1_ASM2860988v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2524840", "genome_size_ungapped": "2524840", "gc_percent": "61.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028609885.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "2262", "protein_coding_gene_count": "2150", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-13", "dateModified": "2023-02-13", "datePublished": "2023-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium jeikeium" ], "sample_taxid": [ "38289" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.708 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2524840", "Number of Sequences": "1", "Longest Sequences (bp)": "2524840", "N50 (bp)": "2524840", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.4", "Number of CDSs": "2229", "Average Protein Length": "336.3", "Coding Ratio (%)": "89.1", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium jeikeium", "strain": "strain=NCTC11913", "accession": "GCA_900461185.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9958, "matched_fragments": 835, "total_fragments": 841, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_001999385.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9355, "matched_fragments": 772, "total_fragments": 841, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_000163435.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.8748, "matched_fragments": 810, "total_fragments": 841, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=NCTC12011", "accession": "GCA_900187235.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 81.3757, "matched_fragments": 313, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=FDAARGOS_994", "accession": "GCA_016127975.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 81.3551, "matched_fragments": 308, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium falsenii", "strain": "strain=FDAARGOS_1494", "accession": "GCA_020099275.1", "taxid": 108486, "species_taxid": 108486, "relation_to_type": "type", "validated": true, "ani": 79.9505, "matched_fragments": 353, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium dentalis", "strain": "strain=Marseille-P4122", "accession": "GCA_900232865.1", "taxid": 2014528, "species_taxid": 2014528, "relation_to_type": "type", "validated": true, "ani": 79.4168, "matched_fragments": 261, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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