{ "type": "genome", "identifier": "GCF_028617075.1", "organism": "Rubrobacter calidifluminis", "title": "Rubrobacter calidifluminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Center for Neuroscience and Cell Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028617075.1", "bioproject": "PRJNA224116", "biosample": "SAMN32795443", "wgs_master": "JAQKGV000000000.1", "refseq_category": "reference genome", "taxid": "1392640", "species_taxid": "1392640", "organism_name": "Rubrobacter calidifluminis", "infraspecific_name": "strain=RG-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/13", "asm_name": "ASM2861707v1", "asm_submitter": "Center for Neuroscience and Cell Biology", "gbrs_paired_asm": "GCA_028617075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/617/075/GCF_028617075.1_ASM2861707v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3090495", "genome_size_ungapped": "3090495", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028617075.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "3166", "protein_coding_gene_count": "3081", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-13", "dateModified": "2023-02-13", "datePublished": "2023-02-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubrobacter calidifluminis" ], "sample_taxid": [ "1392640" ], "sample_host_organism": [], 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"ani": 77.3965, "matched_fragments": 221, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrobacter indicoceani", "strain": "strain=SCSIO 08198", "accession": "GCA_003568865.1", "taxid": 2051957, "species_taxid": 2051957, "relation_to_type": "type", "validated": true, "ani": 76.7361, "matched_fragments": 176, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus radiotolerans", "strain": "strain=SRS30216", "accession": "GCA_000017305.1", "taxid": 131568, "species_taxid": 131568, "relation_to_type": "type", "validated": true, "ani": 75.0847, "matched_fragments": 76, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 75.0685, "matched_fragments": 92, 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