{
    "type": "genome",
    "identifier": "GCF_028622115.1",
    "organism": "Kutzneria chonburiensis",
    "title": "Kutzneria chonburiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028622115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28106906",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1483604",
        "species_taxid": "1483604",
        "organism_name": "Kutzneria chonburiensis",
        "infraspecific_name": "strain=SMC256",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/14",
        "asm_name": "ASM2862211v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_028622115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/622/115/GCF_028622115.1_ASM2862211v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "10411187",
        "genome_size_ungapped": "10411187",
        "gc_percent": "70.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_028622115.1-RS_2024_03_25",
        "annotation_date": "2024-03-25",
        "total_gene_count": "9696",
        "protein_coding_gene_count": "9424",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-14",
    "dateModified": "2023-02-14",
    "datePublished": "2023-02-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kutzneria chonburiensis"
        ],
        "sample_taxid": [
            "1483604"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand: Chonburi Province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.794 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "10411187",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "10411187",
        "N50 (bp)": "10411187",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "9766",
        "Average Protein Length": "328.7",
        "Coding Ratio (%)": "92.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "74",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kutzneria kofuensis",
                "strain": "strain=DSM 43851",
                "accession": "GCA_014203355.1",
                "taxid": 103725,
                "species_taxid": 103725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5602,
                "matched_fragments": 2532,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kutzneria buriramensis",
                "strain": "strain=DSM 45791",
                "accession": "GCA_003387475.1",
                "taxid": 1045776,
                "species_taxid": 1045776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9442,
                "matched_fragments": 2507,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=DSM 43679",
                "accession": "GCA_017876325.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.195,
                "matched_fragments": 1119,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=JCM 3313",
                "accession": "GCA_014648515.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0352,
                "matched_fragments": 1115,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix saharensis",
                "strain": "strain=DSM 45456",
                "accession": "GCA_006716745.1",
                "taxid": 571190,
                "species_taxid": 571190,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7761,
                "matched_fragments": 1179,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptoalloteichus hindustanus",
                "strain": "strain=DSM 44523",
                "accession": "GCA_900129375.1",
                "taxid": 2017,
                "species_taxid": 2017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6516,
                "matched_fragments": 937,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix deserti",
                "strain": "strain=BMP B8144",
                "accession": "GCA_009769385.1",
                "taxid": 2593674,
                "species_taxid": 2593674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6414,
                "matched_fragments": 1134,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix texasensis",
                "strain": "strain=DSM 44231",
                "accession": "GCA_003752005.1",
                "taxid": 103734,
                "species_taxid": 103734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6378,
                "matched_fragments": 1249,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix violaceirubra",
                "strain": "strain=DSM 45084",
                "accession": "GCA_014203755.1",
                "taxid": 413306,
                "species_taxid": 413306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.573,
                "matched_fragments": 926,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix syringae",
                "strain": "strain=NRRL B-16468",
                "accession": "GCA_009498035.1",
                "taxid": 103733,
                "species_taxid": 103733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5454,
                "matched_fragments": 1375,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix syringae",
                "strain": "strain=NRRL B-16468",
                "accession": "GCA_000716755.1",
                "taxid": 103733,
                "species_taxid": 103733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5219,
                "matched_fragments": 1359,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora spheciospongiae",
                "strain": "strain=EG49",
                "accession": "GCA_000564855.1",
                "taxid": 909613,
                "species_taxid": 909613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4891,
                "matched_fragments": 975,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora hordei",
                "strain": "strain=DSM 44065",
                "accession": "GCA_013410345.1",
                "taxid": 1838,
                "species_taxid": 1838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4854,
                "matched_fragments": 852,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinosynnema mirum",
                "strain": "strain=DSM 43827",
                "accession": "GCA_000023245.1",
                "taxid": 40567,
                "species_taxid": 40567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4831,
                "matched_fragments": 1064,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora globicatena",
                "strain": "strain=DSM 44256",
                "accession": "GCA_024171945.1",
                "taxid": 103729,
                "species_taxid": 103729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4759,
                "matched_fragments": 897,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora bangkokensis",
                "strain": "strain=44EHW",
                "accession": "GCA_001940455.1",
                "taxid": 1193682,
                "species_taxid": 1193682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4751,
                "matched_fragments": 1038,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora enzanensis",
                "strain": "strain=DSM 44649",
                "accession": "GCA_000374445.1",
                "taxid": 155975,
                "species_taxid": 155975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4558,
                "matched_fragments": 931,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix obliqua",
                "strain": "strain=SC076",
                "accession": "GCA_019375475.1",
                "taxid": 2861747,
                "species_taxid": 2861747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3868,
                "matched_fragments": 1027,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora diospyrosa",
                "strain": "strain=DSM 44255",
                "accession": "GCA_024171925.1",
                "taxid": 103728,
                "species_taxid": 103728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3707,
                "matched_fragments": 892,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentzea aerocolonigenes",
                "strain": "strain=DSM 40034",
                "accession": "GCA_024171805.1",
                "taxid": 68170,
                "species_taxid": 68170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2121,
                "matched_fragments": 1091,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis tolypomycina",
                "strain": "strain=DSM 44544",
                "accession": "GCA_900105945.1",
                "taxid": 208445,
                "species_taxid": 208445,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0662,
                "matched_fragments": 1259,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis rifamycinica",
                "strain": "strain=DSM 46095",
                "accession": "GCA_000695625.1",
                "taxid": 287986,
                "species_taxid": 287986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0306,
                "matched_fragments": 1191,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella cavernicola",
                "strain": "strain=ASG 168",
                "accession": "GCA_016595675.1",
                "taxid": 2800127,
                "species_taxid": 2800127,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6897,
                "matched_fragments": 839,
                "total_fragments": 3470,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000568255.1",
                "gtdb_species": "s__Kutzneria sp000568255",
                "ani": 89.0267,
                "matched_fragments": 2654,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kutzneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014203355.1",
                "gtdb_species": "s__Kutzneria kofuensis",
                "ani": 88.5911,
                "matched_fragments": 2526,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kutzneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018263855.1",
                "gtdb_species": "s__Kutzneria sp018263855",
                "ani": 87.3643,
                "matched_fragments": 2515,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kutzneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003387475.1",
                "gtdb_species": "s__Kutzneria buriramensis",
                "ani": 86.9457,
                "matched_fragments": 2507,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kutzneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014138725.1",
                "gtdb_species": "s__Kutzneria viridogrisea",
                "ani": 80.9622,
                "matched_fragments": 1577,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kutzneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006716745.1",
                "gtdb_species": "s__Actinosynnema saharense",
                "ani": 78.7198,
                "matched_fragments": 1188,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003634935.1",
                "gtdb_species": "s__Actinosynnema australiense",
                "ani": 78.6536,
                "matched_fragments": 1107,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003752005.1",
                "gtdb_species": "s__Actinosynnema texasense",
                "ani": 78.645,
                "matched_fragments": 1248,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009769385.1",
                "gtdb_species": "s__Actinosynnema deserti",
                "ani": 78.5853,
                "matched_fragments": 1151,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000023245.1",
                "gtdb_species": "s__Actinosynnema mirum",
                "ani": 78.4315,
                "matched_fragments": 1073,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema",
                "ani_circumscription_radius": 96.4703,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003182415.1",
                "gtdb_species": "s__Actinokineospora mzabensis",
                "ani": 78.4291,
                "matched_fragments": 994,
                "total_fragments": 3470,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinokineospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.5,
        "optimum_ph": null,
        "genome_size": 10911922.166,
        "gc_content": 70.6,
        "coding_genes": 8614.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 0.666,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.333,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.666,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kutzneria",
        "chonburiensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}