{
    "type": "genome",
    "identifier": "GCF_028737415.2",
    "organism": "Microbacterium thalli",
    "title": "Microbacterium thalli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Escuela Nacional de Ciencias Biologicas-IPN",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_028737415.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33195177",
        "wgs_master": "JAQZCG000000000.2",
        "refseq_category": "na",
        "taxid": "3027921",
        "species_taxid": "3027921",
        "organism_name": "Microbacterium thalli",
        "infraspecific_name": "strain=NM3R9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/07/15",
        "asm_name": "ASM2873741v2",
        "asm_submitter": "Escuela Nacional de Ciencias Biologicas-IPN",
        "gbrs_paired_asm": "GCA_028737415.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/737/415/GCF_028737415.2_ASM2873741v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2845005",
        "genome_size_ungapped": "2845005",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "67",
        "contig_count": "67",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_028737415.2-RS_2024_07_16",
        "annotation_date": "2024-07-16",
        "total_gene_count": "2791",
        "protein_coding_gene_count": "2710",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-07-15",
    "dateModified": "2023-07-15",
    "datePublished": "2023-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacterium thalli"
        ],
        "sample_taxid": [
            "3027921"
        ],
        "sample_host_organism": [
            "Prosopis laevigata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico:San Luis Potosi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2845005",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "226963",
        "N50 (bp)": "100549",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.8",
        "Number of CDSs": "2701",
        "Average Protein Length": "326.5",
        "Coding Ratio (%)": "93.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium imperiale",
                "strain": "strain=DSM 20530",
                "accession": "GCA_017876655.1",
                "taxid": 33884,
                "species_taxid": 33884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3415,
                "matched_fragments": 848,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium radiodurans",
                "strain": "strain=DSM 25564",
                "accession": "GCA_008710705.1",
                "taxid": 661398,
                "species_taxid": 661398,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2095,
                "matched_fragments": 710,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium lacticum",
                "strain": "strain=NBRC 14135",
                "accession": "GCA_006539445.1",
                "taxid": 33885,
                "species_taxid": 33885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6243,
                "matched_fragments": 502,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium aurum",
                "strain": "strain=DSM 8600",
                "accession": "GCA_016907815.1",
                "taxid": 36805,
                "species_taxid": 36805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5655,
                "matched_fragments": 532,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=NBRC 15708",
                "accession": "GCA_001592125.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5507,
                "matched_fragments": 536,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium hominis",
                "strain": "strain=LCDC 84-0209",
                "accession": "GCA_001553805.1",
                "taxid": 162426,
                "species_taxid": 162426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4756,
                "matched_fragments": 541,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium saccharophilum",
                "strain": "strain=NBRC 108778",
                "accession": "GCA_007992455.1",
                "taxid": 1213358,
                "species_taxid": 1213358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.385,
                "matched_fragments": 538,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium saccharophilum",
                "strain": "strain=K-1",
                "accession": "GCA_008017435.1",
                "taxid": 1213358,
                "species_taxid": 1213358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2065,
                "matched_fragments": 553,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium pullorum",
                "strain": "strain=Sa4CUA7",
                "accession": "GCA_014836535.1",
                "taxid": 2762236,
                "species_taxid": 2762236,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0813,
                "matched_fragments": 523,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium kyungheense",
                "strain": "strain=DSM 105492",
                "accession": "GCA_006783905.1",
                "taxid": 1263636,
                "species_taxid": 1263636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9629,
                "matched_fragments": 499,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium gallinarum",
                "strain": "strain=Sa1CUA4",
                "accession": "GCA_014837165.1",
                "taxid": 2762209,
                "species_taxid": 2762209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8692,
                "matched_fragments": 510,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=DSM 19600",
                "accession": "GCA_023155715.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8312,
                "matched_fragments": 520,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium helvum",
                "strain": "strain=NEAU-LLC",
                "accession": "GCA_014779795.1",
                "taxid": 2773713,
                "species_taxid": 2773713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7436,
                "matched_fragments": 547,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium ulmi",
                "strain": "strain=CECT 5976",
                "accession": "GCA_011759705.1",
                "taxid": 179095,
                "species_taxid": 179095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6127,
                "matched_fragments": 484,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sulfonylureivorans",
                "strain": "strain=LAM7116",
                "accession": "GCA_003999995.1",
                "taxid": 2486854,
                "species_taxid": 2486854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5785,
                "matched_fragments": 509,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium ulmi",
                "strain": "strain=JCM 14282",
                "accession": "GCA_013004565.1",
                "taxid": 179095,
                "species_taxid": 179095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5273,
                "matched_fragments": 489,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium yannicii",
                "strain": "strain=DSM 23203",
                "accession": "GCA_024055635.1",
                "taxid": 671622,
                "species_taxid": 671622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2985,
                "matched_fragments": 526,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017876655.1",
                "gtdb_species": "s__Microbacterium imperiale",
                "ani": 91.3415,
                "matched_fragments": 848,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002245215.1",
                "gtdb_species": "s__Microbacterium sp002245215",
                "ani": 85.5462,
                "matched_fragments": 789,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003289625.1",
                "gtdb_species": "s__Microbacterium sp003289625",
                "ani": 85.454,
                "matched_fragments": 777,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003339645.1",
                "gtdb_species": "s__Microbacterium arborescens",
                "ani": 85.43,
                "matched_fragments": 751,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900102175.1",
                "gtdb_species": "s__Microbacterium sp900102175",
                "ani": 85.3116,
                "matched_fragments": 719,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610405.1",
                "gtdb_species": "s__Microbacterium sp003610405",
                "ani": 85.2699,
                "matched_fragments": 750,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013389665.1",
                "gtdb_species": "s__Microbacterium oleivorans_C",
                "ani": 85.1257,
                "matched_fragments": 752,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.344,
        "cell_length": -0.025,
        "doubling_h": null,
        "growth_tmp": 28.643,
        "optimum_tmp": 29.019,
        "optimum_ph": 7.341,
        "genome_size": 3469503.118,
        "gc_content": 69.764,
        "coding_genes": 3206.916,
        "rRNA16S_genes": 1.75,
        "tRNA_genes": 50.166,
        "gram_stain": 1.0,
        "sporulation": 0.111,
        "motility": 0.289,
        "range_salinity": 1.0,
        "facultative_respiration": 0.012,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.987,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.977,
        "coccus_cell_shape": 0.022,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Microbacterium",
        "thalli"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}