{ "type": "genome", "identifier": "GCF_028743515.2", "organism": "Imtechella halotolerans", "title": "Imtechella halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zymo Research Corporation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028743515.2", "bioproject": "PRJNA224116", "biosample": "SAMN33245274", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1165090", "species_taxid": "1165090", "organism_name": "Imtechella halotolerans", "infraspecific_name": "strain=JCM 17677", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/09/01", "asm_name": "ASM2874351v2", "asm_submitter": "Zymo Research Corporation", "gbrs_paired_asm": "GCA_028743515.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/743/515/GCF_028743515.2_ASM2874351v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3113111", "genome_size_ungapped": "3113111", "gc_percent": "35.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028743515.2-RS_2024_09_07", "annotation_date": "2024-09-07", "total_gene_count": "2754", "protein_coding_gene_count": "2684", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-09-01", "dateModified": "2023-09-01", "datePublished": "2023-09-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Imtechella halotolerans" ], "sample_taxid": [ "1165090" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3113111", "Number of Sequences": "1", "Longest Sequences (bp)": "3113111", "N50 (bp)": "3113111", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.6", "Number of CDSs": "2690", "Average Protein Length": "347.7", "Coding Ratio (%)": "90.1", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Imtechella halotolerans", "strain": "strain=K1", "accession": "GCA_000260835.1", "taxid": 1165090, "species_taxid": 1165090, "relation_to_type": "type", "validated": true, "ani": 99.9765, "matched_fragments": 1004, "total_fragments": 1037, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.8188, "matched_fragments": 56, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssalbus ytuae", "strain": "strain=MT3330", "accession": "GCA_022807975.1", "taxid": 2926907, "species_taxid": 2926907, "relation_to_type": "type", "validated": true, "ani": 77.5733, "matched_fragments": 85, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella marina", "strain": "strain=DSM 19592", "accession": "GCA_000260115.1", "taxid": 453852, "species_taxid": 453852, "relation_to_type": "type", "validated": true, "ani": 77.4474, "matched_fragments": 102, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=KCTC 23008", "accession": "GCA_009363055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 77.2429, "matched_fragments": 83, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantibacter crassamenti", "strain": "strain=HG732", "accession": "GCA_016811105.1", "taxid": 1837375, "species_taxid": 1837375, "relation_to_type": "type", "validated": true, "ani": 77.1779, "matched_fragments": 77, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhouia amylolytica", "strain": "strain=CGMCC 1.6114", "accession": "GCA_900116365.1", "taxid": 376730, "species_taxid": 376730, "relation_to_type": "type", "validated": true, "ani": 77.147, "matched_fragments": 83, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 77.1041, "matched_fragments": 70, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.9485, "matched_fragments": 57, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.9396, "matched_fragments": 59, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pustulibacterium marinum", "strain": "strain=CGMCC 1.12333", "accession": "GCA_900116665.1", "taxid": 1224947, 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"relation_to_type": "type", "validated": true, "ani": 76.7754, "matched_fragments": 53, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=DSM 22807", "accession": "GCA_900142055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 76.7479, "matched_fragments": 81, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 76.6131, "matched_fragments": 62, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jejuense", "strain": "strain=EC11", "accession": "GCA_006491595.2", "taxid": 1544455, "species_taxid": 1544455, "relation_to_type": "type", "validated": true, "ani": 76.5498, "matched_fragments": 78, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.4825, "matched_fragments": 70, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 76.4695, "matched_fragments": 61, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.3528, "matched_fragments": 64, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 76.3388, "matched_fragments": 60, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=KCTC 12220", "accession": "GCA_014651315.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 76.1049, "matched_fragments": 59, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=KCTC 12285", "accession": "GCA_014651355.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 76.0996, "matched_fragments": 85, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=DSM 19832", "accession": "GCA_000430665.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 76.0527, "matched_fragments": 84, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000260835.1", "gtdb_species": "s__Imtechella halotolerans", "ani": 99.9765, "matched_fragments": 1004, "total_fragments": 1037, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Imtechella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013391805.1", "gtdb_species": "s__Galbibacter_A 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