{ "type": "genome", "identifier": "GCF_028864255.1", "organism": "Dechloromonas agitata", "title": "Dechloromonas agitata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_028864255.1", "bioproject": "PRJNA224116", "biosample": "SAMN33231811", "wgs_master": "JARBJQ000000000.1", "refseq_category": "na", "taxid": "73030", "species_taxid": "73030", "organism_name": "Dechloromonas agitata", "infraspecific_name": "strain=DSM 13637", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/26", "asm_name": "ASM2886425v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_028864255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/028/864/255/GCF_028864255.1_ASM2886425v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3962096", "genome_size_ungapped": "3962096", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_028864255.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3883", "protein_coding_gene_count": "3799", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-26", "dateModified": "2023-02-26", "datePublished": "2023-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Dechloromonas agitata" ], "sample_taxid": [ "73030" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pennsylvania" ], 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"status": "below_threshold" }, { "organism_name": "Azonexus fungiphilus", "strain": "strain=DSM 23841", "accession": "GCA_003634965.1", "taxid": 146940, "species_taxid": 146940, "relation_to_type": "type", "validated": true, "ani": 82.5385, "matched_fragments": 649, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dechloromonas denitrificans", "strain": "strain=ATCC BAA-841", "accession": "GCA_001551835.1", "taxid": 281362, "species_taxid": 281362, "relation_to_type": "type", "validated": true, "ani": 82.506, "matched_fragments": 762, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus hydrophilus", "strain": "strain=DSM 23864", "accession": "GCA_000429605.1", "taxid": 418702, "species_taxid": 418702, "relation_to_type": "type", "validated": true, "ani": 82.4717, "matched_fragments": 615, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospira oryzae", "strain": "strain=DSM 21223", "accession": "GCA_004217225.1", "taxid": 146939, "species_taxid": 146939, "relation_to_type": "type", "validated": true, "ani": 78.8657, "matched_fragments": 438, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 78.8539, "matched_fragments": 372, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 78.7884, "matched_fragments": 350, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", 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"matched_fragments": 315, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 77.9499, "matched_fragments": 302, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.203, "matched_fragments": 238, "total_fragments": 1301, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.1675, "matched_fragments": 236, 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