{
    "type": "genome",
    "identifier": "GCF_029023765.1",
    "organism": "Aerococcus viridans",
    "title": "Aerococcus viridans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Agroscope",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029023765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33336520",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1377",
        "species_taxid": "1377",
        "organism_name": "Aerococcus viridans",
        "infraspecific_name": "strain=DSM 20340",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/03/08",
        "asm_name": "ASM2902376v1",
        "asm_submitter": "Agroscope",
        "gbrs_paired_asm": "GCA_029023765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/023/765/GCF_029023765.1_ASM2902376v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2204952",
        "genome_size_ungapped": "2204952",
        "gc_percent": "39.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029023765.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "2072",
        "protein_coding_gene_count": "1908",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-03-08",
    "dateModified": "2023-03-08",
    "datePublished": "2023-03-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aerococcus viridans"
        ],
        "sample_taxid": [
            "1377"
        ],
        "sample_host_organism": [
            "Air"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2204952",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2204952",
        "N50 (bp)": "2204952",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.4",
        "Number of CDSs": "2033",
        "Average Protein Length": "301.0",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "22",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aerococcus viridans",
                "strain": "strain=CCUG4311",
                "accession": "GCA_001543285.1",
                "taxid": 1377,
                "species_taxid": 1377,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9863,
                "matched_fragments": 728,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aerococcus viridans",
                "strain": "strain=NCTC8251",
                "accession": "GCA_900445095.1",
                "taxid": 1377,
                "species_taxid": 1377,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9862,
                "matched_fragments": 730,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aerococcus viridans",
                "strain": "strain=ATCC 11563",
                "accession": "GCA_000178435.1",
                "taxid": 1377,
                "species_taxid": 1377,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.8279,
                "matched_fragments": 595,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aerococcus urinaeequi",
                "strain": "strain=CCUG28094",
                "accession": "GCA_001543205.1",
                "taxid": 51665,
                "species_taxid": 51665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.912,
                "matched_fragments": 558,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aerococcus urinaeequi",
                "strain": "strain=DSM 20341",
                "accession": "GCA_000425085.1",
                "taxid": 51665,
                "species_taxid": 51665,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.7626,
                "matched_fragments": 542,
                "total_fragments": 734,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001543285.1",
                "gtdb_species": "s__Aerococcus viridans",
                "ani": 99.9863,
                "matched_fragments": 728,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002083135.2",
                "gtdb_species": "s__Aerococcus viridans_C",
                "ani": 94.6699,
                "matched_fragments": 569,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002440555.1",
                "gtdb_species": "s__Aerococcus sp002440555",
                "ani": 94.0421,
                "matched_fragments": 516,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001543205.1",
                "gtdb_species": "s__Aerococcus urinaeequi",
                "ani": 93.9194,
                "matched_fragments": 557,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.56",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_002871935.1",
                "gtdb_species": "s__Aerococcus viridans_B",
                "ani": 84.4212,
                "matched_fragments": 455,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003797145.1",
                "gtdb_species": "s__Aerococcus sp003797145",
                "ani": 80.9951,
                "matched_fragments": 287,
                "total_fragments": 734,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 32.5,
        "optimum_tmp": 37.0,
        "optimum_ph": 9.6,
        "genome_size": 2114734.714,
        "gc_content": 39.45,
        "coding_genes": 1909.333,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 55.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aerococcus",
        "viridans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}