{ "type": "genome", "identifier": "GCF_029024105.1", "organism": "Acinetobacter lwoffii", "title": "Acinetobacter lwoffii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Agroscope", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029024105.1", "bioproject": "PRJNA224116", "biosample": "SAMN33336513", "wgs_master": "na", "refseq_category": "na", "taxid": "28090", "species_taxid": "28090", "organism_name": "Acinetobacter lwoffii", "infraspecific_name": "strain=DSM 2403", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/08", "asm_name": "ASM2902410v1", "asm_submitter": "Agroscope", "gbrs_paired_asm": "GCA_029024105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/024/105/GCF_029024105.1_ASM2902410v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3463679", "genome_size_ungapped": "3463679", "gc_percent": "43.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029024105.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "3370", "protein_coding_gene_count": "3132", "non_coding_gene_count": "112", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-08", "dateModified": "2023-03-08", "datePublished": "2023-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter lwoffii" ], "sample_taxid": [ "28090" ], "sample_host_organism": [ "Unknown" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "0.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3463679", "Number of Sequences": "6", "Longest Sequences (bp)": "3166595", "N50 (bp)": "3166595", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "3274", "Average Protein Length": "301.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "21", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter lwoffii", "strain": "strain=NCTC5866", "accession": "GCA_900699155.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 99.9978, "matched_fragments": 1144, "total_fragments": 1150, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 99.9924, "matched_fragments": 1147, "total_fragments": 1150, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 90.6501, "matched_fragments": 893, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 88.7792, "matched_fragments": 864, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 84.6678, "matched_fragments": 816, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 83.421, "matched_fragments": 697, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 81.3582, "matched_fragments": 538, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.6668, "matched_fragments": 559, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.4195, "matched_fragments": 471, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.7974, "matched_fragments": 353, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.6164, "matched_fragments": 316, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.5146, "matched_fragments": 324, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.4633, "matched_fragments": 323, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000487975.1", "gtdb_species": "s__Acinetobacter lwoffii", "ani": 99.9702, 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"matched_fragments": 953, "total_fragments": 1150, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_000761495.1", "gtdb_species": "s__Acinetobacter idrijaensis", "ani": 96.0014, "matched_fragments": 924, "total_fragments": 1150, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 96.2371, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_015602705.1", "gtdb_species": "s__Acinetobacter lwoffii_E", "ani": 95.9771, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "lwoffii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }