{
    "type": "genome",
    "identifier": "GCF_029024465.1",
    "organism": "Lactococcus garvieae subsp. garvieae",
    "title": "Lactococcus garvieae subsp. garvieae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Agroscope",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029024465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33336519",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1890280",
        "species_taxid": "1363",
        "organism_name": "Lactococcus garvieae subsp. garvieae",
        "infraspecific_name": "strain=DSM 20684",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/03/08",
        "asm_name": "ASM2902446v1",
        "asm_submitter": "Agroscope",
        "gbrs_paired_asm": "GCA_029024465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/024/465/GCF_029024465.1_ASM2902446v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2093258",
        "genome_size_ungapped": "2093258",
        "gc_percent": "38.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029024465.1-RS_2024_04_01",
        "annotation_date": "2024-04-01",
        "total_gene_count": "2122",
        "protein_coding_gene_count": "1993",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-03-08",
    "dateModified": "2023-03-08",
    "datePublished": "2023-03-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus garvieae subsp. garvieae"
        ],
        "sample_taxid": [
            "1890280"
        ],
        "sample_host_organism": [
            "Cow"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.592 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2093258",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2048553",
        "N50 (bp)": "2048553",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.7",
        "Number of CDSs": "2064",
        "Average Protein Length": "293.0",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "16",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=FDAARGOS_929",
                "accession": "GCA_016026695.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9979,
                "matched_fragments": 687,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae subsp. garvieae",
                "strain": "strain=CCUG 32208T",
                "accession": "GCA_008692985.1",
                "taxid": 1890280,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9452,
                "matched_fragments": 656,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=DSM 20684",
                "accession": "GCA_002441675.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9351,
                "matched_fragments": 634,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus garvieae",
                "strain": "strain=NBRC 100934",
                "accession": "GCA_000739975.1",
                "taxid": 1363,
                "species_taxid": 1363,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9281,
                "matched_fragments": 643,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus petauri",
                "strain": "strain=159469",
                "accession": "GCA_002154895.1",
                "taxid": 1940789,
                "species_taxid": 1940789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7694,
                "matched_fragments": 567,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus formosensis subsp. bovis",
                "strain": "strain=LMG 30663",
                "accession": "GCA_018403725.1",
                "taxid": 1850438,
                "species_taxid": 1281486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9844,
                "matched_fragments": 539,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000739975.1",
                "gtdb_species": "s__Lactococcus garvieae",
                "ani": 99.9281,
                "matched_fragments": 643,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002154895.1",
                "gtdb_species": "s__Lactococcus petauri",
                "ani": 92.7694,
                "matched_fragments": 567,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_018403745.1",
                "gtdb_species": "s__Lactococcus formosensis",
                "ani": 90.9623,
                "matched_fragments": 550,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_016758115.1",
                "gtdb_species": "s__Lactococcus sp002492185",
                "ani": 83.7661,
                "matched_fragments": 374,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016027715.1",
                "gtdb_species": "s__Lactococcus garvieae_A",
                "ani": 83.1487,
                "matched_fragments": 434,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003337175.1",
                "gtdb_species": "s__Streptococcus gallolyticus_B",
                "ani": 77.6039,
                "matched_fragments": 51,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.6693,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": -0.302,
        "doubling_h": -0.114,
        "growth_tmp": 32.333,
        "optimum_tmp": 34.5,
        "optimum_ph": 5.9,
        "genome_size": 2084354.6,
        "gc_content": 38.378,
        "coding_genes": 1886.5,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 61.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lactococcus",
        "garvieae",
        "subsp.",
        "garvieae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}