# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_14	LOCUS_00140	sequence1:17567..18964(+)	frameshift		18928	WP_002470520.1	DHH family phosphoesterase	98.3	69.8	78.8
MGA_15	LOCUS_00150	sequence1:18936..19532(+)	frameshift		18931	WP_002470520.1	DHH family phosphoesterase	100.0	30.2	88.4
MGA_32	LOCUS_00320	sequence1:38169..38807(+)	partial			WP_010886457.1	mechanosensitive ion channel	97.6	38.2	28.4
MGA_36	LOCUS_00360	sequence1:44684..45259(+)	partial			WP_000762853.1	restriction endonuclease subunit S	64.4	64.9	33.3
MGA_43	LOCUS_00430	sequence1:55382..57832(+)	partial			WP_000443951.1	5-methylcytosine-specific restriction endonuclease subunit McrB	35.7	63.6	53.9
MGA_75	LOCUS_00750	sequence1:92667..93170(+)	partial			WP_013098871.1	DUF805 domain-containing protein	50.3	79.3	30.2
MGA_77	LOCUS_00770	sequence1:94278..96134(-)	partial			WP_002370472.1	glycosyltransferase family A protein	44.3	57.0	29.8
MGA_78	LOCUS_00780	sequence1:96477..96734(+)	partial			WP_011948489.1	HAMP domain-containing sensor histidine kinase	92.9	26.9	40.7
MGA_101	LOCUS_01010	sequence1:121294..121818(+)	partial			WP_010989534.1	DUF3267 domain-containing protein	66.7	65.0	41.4
MGA_122	LOCUS_01220	sequence1:144792..146687(-)	partial			WP_086395912.1	DUF6359 domain-containing protein	92.7	70.9	41.4
MGA_123	LOCUS_01230	sequence1:146953..148737(+)	partial			WP_011015494.1	metallophosphoesterase family protein	65.0	58.3	24.9
MGA_139	LOCUS_01390	sequence1:162928..163926(+)	partial			WP_049769589.1	TRAP transporter large permease subunit	100.0	52.7	39.5
MGA_141	LOCUS_01410	sequence1:164947..165408(-)	partial			WP_011837648.1	helix-turn-helix transcriptional regulator	70.6	67.9	34.2
MGA_144	LOCUS_01440	sequence1:167190..167858(+)	frameshift		167774	WP_001832362.1	YitT family protein	86.9	68.4	66.3
MGA_145	LOCUS_01450	sequence1:167855..168028(+)	frameshift		167774	WP_001832362.1	YitT family protein	100.0	20.2	64.9
MGA_165	LOCUS_01650	sequence1:189643..190062(+)	partial			WP_001237629.1	hypothetical protein	74.8	76.1	37.1
MGA_166	LOCUS_01660	sequence1:190329..190874(+)	partial			WP_000540719.1	HAD-IA family hydrolase	57.5	44.8	41.3
MGA_189	LOCUS_01890	sequence1:216352..217785(+)	partial			WP_010905604.1	YhgE/Pip domain-containing protein	56.6	34.8	30.2
MGA_214	LOCUS_02140	sequence1:241223..242023(-)	frameshift		242097	WP_000570687.1	alanine/glycine:cation symporter family protein	94.7	48.1	72.6
MGA_215	LOCUS_02150	sequence1:242059..242790(-)	frameshift		242097	WP_000570687.1	alanine/glycine:cation symporter family protein	95.1	44.3	69.7
MGA_221	LOCUS_02210	sequence1:248352..249266(+)	partial			WP_011082831.1	MSCRAMM family adhesin SdrF	92.8	18.7	26.9
MGA_222	LOCUS_02220	sequence1:249366..253829(+)	frameshift,internal_stop_codon	253827..253829(+),253801..253803(+),253851..253853(+)	253811,253862,253799,253802,253805	WP_011109597.1	Ig-like domain-containing protein	72.6	64.3	30.7
MGA_223	LOCUS_02230	sequence1:253906..254679(+)	frameshift		253802,253811,253805	WP_011109597.1	Ig-like domain-containing protein	42.4	6.3	33.3
MGA_227	LOCUS_02270	sequence1:258726..260087(+)	partial			WP_000736784.1	glycine-glycine endopeptidase LytM	28.3	40.5	74.2
MGA_231	LOCUS_02310	sequence1:262182..262808(+)	partial			WP_003131606.1	TDT family transporter	99.5	63.3	32.9
MGA_281	LOCUS_02810	sequence1:317575..317766(+)	partial			WP_002494449.1	IS1182-like element ISSep1 family transposase	96.8	10.6	63.9
MGA_302	LOCUS_03020	sequence1:343988..345259(+)	internal_stop_codon	345257..345259(+)		WP_000838205.1	glucose-specific PTS transporter subunit IIBC	99.8	82.9	82.2
MGA_303	LOCUS_03030	sequence1:345365..345526(+)	internal_stop_codon	345257..345259(+)		WP_000838205.1	glucose-specific PTS transporter subunit IIBC	90.6	9.4	66.7
MGA_319	LOCUS_03190	sequence1:361406..362290(-)	partial			WP_014206209.1	aromatic acid/H+ symport family MFS transporter	91.8	59.3	41.5
MGA_320	LOCUS_03200	sequence1:362380..362754(+)	partial			WP_015706103.1	3-hydroxybenzoate 6-monooxygenase	83.9	25.9	41.3
MGA_363	LOCUS_03630	sequence1:404446..405240(+)	partial			WP_001829860.1	serine protease	77.3	74.8	45.5
MGA_383	LOCUS_03830	sequence1:426342..426596(-)	partial			WP_001797239.1	lactococcin 972 family bacteriocin	75.0	70.0	57.1
MGA_386	LOCUS_03860	sequence1:428825..429397(+)	frameshift		429376	WP_009967022.1	DUF819 domain-containing protein	96.8	46.5	61.4
MGA_387	LOCUS_03870	sequence1:429480..430022(+)	frameshift		429382	WP_009967022.1	DUF819 domain-containing protein	96.7	42.7	49.4
MGA_402	LOCUS_04020	sequence1:449104..449607(+)	partial			WP_002485515.1	MFS transporter	79.0	28.8	46.6
MGA_423	LOCUS_04230	sequence1:473250..473501(+)	partial			WP_000240663.1	thioredoxin family protein	100.0	70.3	75.9
MGA_424	LOCUS_04240	sequence1:473593..473850(+)	partial			WP_002494449.1	IS1182-like element ISSep1 family transposase	90.6	13.8	63.6
MGA_475	LOCUS_04750	sequence1:534993..536183(+)	partial			WP_011388674.1	response regulator	25.3	28.1	31.0
MGA_486	LOCUS_04860	sequence1:547767..548396(-)	frameshift,internal_stop_codon	548396..548398(-)	548407	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	97.6	44.2	71.1
MGA_496	LOCUS_04960	sequence1:556406..557269(+)	partial			WP_002485467.1	NAD(P)H-binding protein	48.4	27.4	27.7
MGA_524	LOCUS_05240	sequence1:587434..587874(+)	partial			WP_003721792.1	DUF805 domain-containing protein	64.4	74.6	29.4
MGA_555	LOCUS_05550	sequence1:612112..613866(+)	internal_stop_codon	613864..613866(+)		WP_001118725.1	nitrite reductase large subunit NirB	100.0	72.9	77.2
MGA_556	LOCUS_05560	sequence1:613879..614517(+)	internal_stop_codon	613864..613866(+)		WP_002485232.1	nitrite reductase large subunit NirB	100.0	26.5	83.0
MGA_572	LOCUS_05720	sequence1:631597..632172(+)	partial			WP_001148136.1	SH3 domain-containing protein	81.2	32.8	39.5
MGA_578	LOCUS_05780	sequence1:639231..639863(+)	internal_stop_codon	639861..639863(+)		WP_004398798.1	LLM class flavin-dependent oxidoreductase	99.5	62.0	48.8
MGA_594	LOCUS_05940	sequence1:655966..656859(+)	partial			WP_000827010.1	hypothetical protein	38.0	55.4	46.9
MGA_646	LOCUS_06460	sequence1:713321..713767(-)	frameshift		713793	WP_000659770.1	formate/nitrite transporter family protein	94.6	51.1	65.0
MGA_647	LOCUS_06470	sequence1:713773..714150(-)	frameshift		713799	WP_000659770.1	formate/nitrite transporter family protein	95.2	43.4	74.8
MGA_899	LOCUS_08990	sequence1:961924..963837(+)	partial			WP_049387514.1	MSCRAMM-like protein SdrH	58.4	81.5	32.0
MGA_1152	LOCUS_11500	sequence1:1235850..1236557(+)	partial			WP_015943220.1	hypothetical protein	54.5	73.8	34.8
MGA_1153	LOCUS_11510	sequence1:1236625..1237896(+)	partial			WP_164930145.1	alcohol acetyltransferase	31.0	26.5	34.8
MGA_1227	LOCUS_12250	sequence1:1309999..1310169(+)	partial			WP_000048060.1	30S ribosomal protein S21	76.8	74.1	88.4
MGA_1262	LOCUS_12600	sequence1:1341545..1342258(+)	partial			WP_002440043.1	competence type IV pilus minor pilin ComGF	58.6	83.4	43.6
MGA_1269	LOCUS_12670	sequence1:1348879..1349097(-)	partial			WP_001244298.1	SA1362 family protein	58.3	58.3	81.0
MGA_1315	LOCUS_13130	sequence1:1392664..1394475(+)	partial			WP_000069289.1	elastin-binding protein EbpS	11.1	15.6	65.8
MGA_1443	LOCUS_14410	sequence1:1527605..1528702(-)	partial			WP_011392524.1	acyltransferase	37.5	35.4	30.3
MGA_1458	LOCUS_14560	sequence1:1549653..1549892(-)	partial			WP_001548645.1	YneF family protein	70.9	58.9	67.9
MGA_1494	LOCUS_14920	sequence1:1581609..1582142(-)	frameshift		1581641,1581535	WP_181746991.1	IS1182 family transposase	92.7	34.6	56.7
MGA_1626	LOCUS_16240	sequence1:1738275..1739162(-)	partial			WP_002470268.1	FtsQ-type POTRA domain-containing protein	99.0	63.1	53.4
MGA_1641	LOCUS_16390	sequence1:1752945..1753577(-)	partial			WP_000725652.1	glycerophosphodiester phosphodiesterase	98.1	73.6	35.0
MGA_1731	LOCUS_17290	sequence1:1847569..1847901(-)	internal_stop_codon	1847920..1847922(-)		WP_002439305.1	serine hydrolase domain-containing protein	97.3	27.2	60.6
MGA_1732	LOCUS_17300	sequence1:1847920..1848717(-)	internal_stop_codon	1847920..1847922(-)		WP_002439305.1	serine hydrolase domain-containing protein	83.0	54.5	55.5
MGA_1800	LOCUS_17970	sequence1:1924652..1924816(-)	frameshift		1924872	WP_001829283.1	acyltransferase family protein	98.1	8.7	71.7
MGA_1818	LOCUS_18150	sequence1:1948226..1948540(-)	internal_stop_codon	1948658..1948660(-)		WP_002485215.1	GNAT family protein	97.1	55.5	59.4
MGA_1848	LOCUS_18450	sequence1:1977196..1977696(-)	partial			WP_011082549.1	IS1182-like element ISSep1 family transposase	82.5	24.8	69.3
MGA_1884	LOCUS_18810	sequence1:2010230..2010436(-)	partial			WP_001548522.1	TM2 domain-containing protein	94.1	69.6	71.9
MGA_1913	LOCUS_19100	sequence1:2026167..2026577(-)	partial			WP_001041666.1	LysM peptidoglycan-binding domain-containing protein	97.1	35.5	60.6
MGA_1916	LOCUS_19130	sequence1:2028614..2029339(-)	partial			WP_011022612.1	CPBP family intramembrane metalloprotease	48.5	48.0	36.4
MGA_1919	LOCUS_19160	sequence1:2031327..2031917(+)	partial			WP_000825947.1	hypothetical protein	39.3	50.6	51.9
MGA_1990	LOCUS_19870	sequence1:2100665..2100796(+)	frameshift,internal_stop_codon	2100575..2100577(+)	2100790,2100943	WP_001829625.1	GrpB family protein	97.7	24.0	88.1
MGA_2151	LOCUS_21480	sequence1:2260379..2260699(-)	internal_stop_codon	2260715..2260717(-)		WP_001829442.1	hypothetical protein	100.0	62.4	56.6
MGA_2152	LOCUS_21490	sequence1:2260715..2260888(-)	internal_stop_codon	2260715..2260717(-)		WP_001829442.1	hypothetical protein	98.2	33.5	45.6
MGA_2185	LOCUS_21820	sequence1:2285759..2286484(-)	partial			WP_011229185.1	hypothetical protein	77.2	73.7	23.2
MGA_2196	LOCUS_21930	sequence1:2297424..2297654(-)	frameshift		2297637	WP_002485467.1	NAD(P)H-binding protein	76.3	11.3	74.1
MGA_2197	LOCUS_21940	sequence1:2297632..2297760(-)	frameshift		2297637	WP_002485467.1	NAD(P)H-binding protein	97.6	8.0	73.2
MGA_2202	LOCUS_21990	sequence1:2302137..2303108(+)	partial			WP_002456621.1	fatty acid desaturase	25.7	73.5	66.3
MGA_2209	LOCUS_22060	sequence1:2307218..2308186(+)	partial			WP_014207129.1	type 1 glutamine amidotransferase domain-containing protein	60.2	70.6	25.5
MGA_2210	LOCUS_22070	sequence1:2308215..2309150(+)	partial			WP_003595993.1	low temperature requirement protein A	88.7	72.9	31.8
MGA_2211	LOCUS_22080	sequence1:2309361..2309750(+)	partial			WP_011204015.1	haloacid dehalogenase type II	87.6	45.0	36.8
MGA_2220	LOCUS_22170	sequence1:2318374..2318751(-)	frameshift		2318762	WP_072362001.1	DMT family transporter	53.6	21.5	61.2
MGA_2227	LOCUS_22240	sequence1:2325161..2325517(-)	internal_stop_codon	2325536..2325538(-)		WP_000903451.1	DinB family protein	97.5	70.6	37.6
MGA_2229	LOCUS_22260	sequence1:2326939..2327145(-)	partial			WP_013097374.1	nitroreductase NfsA	89.7	25.4	45.9
MGA_2232	LOCUS_22290	sequence1:2328708..2329316(-)	partial			WP_000448918.1	alpha/beta hydrolase	98.0	71.0	23.4
MGA_2235	LOCUS_22320	sequence1:2331080..2331403(+)	frameshift		2331080	WP_003246601.1	transcriptional regulator LrpA	100.0	78.7	51.4
MGA_2258	LOCUS_22550	sequence1:2357107..2358051(+)	partial			WP_010966245.1	LacI family DNA-binding transcriptional regulator	51.9	47.5	28.6
MGA_2261	LOCUS_22580	sequence1:2360844..2361440(-)	partial			WP_001044560.1	immunodominant staphylococcal antigen IsaB	66.2	74.3	31.3
MGA_2313	LOCUS_23100	sequence1:2431611..2431907(-)	internal_stop_codon	2431926..2431928(-)		WP_000551283.1	hypoxanthine phosphoribosyltransferase	99.0	54.2	90.7
MGA_2314	LOCUS_23110	sequence1:2431926..2432150(-)	internal_stop_codon	2431926..2431928(-)		WP_001832216.1	hypoxanthine phosphoribosyltransferase	100.0	41.3	78.4
MGA_2422	LOCUS_24190	sequence1:2546993..2548258(-)	frameshift		2548241	WP_000169820.1	BglG family transcription antiterminator	90.5	60.2	32.1
MGA_2423	LOCUS_24200	sequence1:2548227..2548853(-)	partial			WP_003243034.1	transcriptional regulator LicR	94.2	31.7	30.4
MGA_2429	LOCUS_24260	sequence1:2553240..2554541(-)	partial			WP_010990014.1	autolysin Ami	49.9	24.2	49.1
MGA_2446	LOCUS_24430	sequence1:2572831..2574108(+)	partial			WP_003247155.1	plipastatin non-ribosomal peptide synthetase PpsB	94.1	16.6	21.3
MGA_2448	LOCUS_24450	sequence1:2582328..2583005(-)	partial			WP_002182762.1	4'-phosphopantetheinyl transferase superfamily protein	69.3	76.9	35.8
MGA_2449	LOCUS_24460	sequence1:2583283..2583486(+)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	58.2
MGA_2460	LOCUS_24570	sequence1:2595460..2596020(-)	frameshift		2596021	WP_011024407.1	iron ABC transporter permease	100.0	54.9	48.1
MGA_2461	LOCUS_24580	sequence1:2595980..2596459(-)	frameshift		2596042	WP_011392937.1	iron ABC transporter permease	77.4	35.1	45.5
MGA_2470	LOCUS_24670	sequence1:2602815..2603249(-)	partial			WP_011072119.1	MarR family transcriptional regulator	71.5	67.3	30.1
MGA_2501	LOCUS_24980	sequence1:2638255..2638755(+)	partial			WP_000861965.1	LytTR family DNA-binding domain-containing protein	71.1	80.8	35.6
MGA_2513	LOCUS_25100	sequence1:2654399..2655274(-)	frameshift		2655365	WP_001083499.1	CitMHS family transporter	100.0	63.8	72.9
MGA_2514	LOCUS_25110	sequence1:2655360..2655770(-)	frameshift		2655365	WP_001083499.1	CitMHS family transporter	99.3	29.6	68.1
MGA_2515	LOCUS_25120	sequence1:2656208..2656621(+)	frameshift		2656176	WP_014327087.1	NADPH-dependent FMN reductase	58.4	43.5	36.2
MGA_2516	LOCUS_25130	sequence1:2656737..2657075(-)	partial			WP_003721389.1	MerR family transcriptional regulator	71.4	62.0	41.2
MGA_2517	LOCUS_25140	sequence1:2657178..2657384(+)	frameshift		2657309	WP_011202737.1	aldo/keto reductase	61.8	12.4	69.0
MGA_2518	LOCUS_25150	sequence1:2657351..2658181(+)	frameshift		2657309	WP_011202737.1	aldo/keto reductase	98.9	80.8	64.5
MGA_2528	LOCUS_25250	sequence1:2666280..2666753(-)	partial			WP_003437466.1	transcriptional regulator GutM	70.7	77.1	45.9
MGA_2538	LOCUS_25350	sequence1:2675206..2675814(+)	partial			WP_003581575.1	stage II sporulation protein M	71.3	69.1	26.4
MGA_2540	LOCUS_25370	sequence1:2676558..2676815(-)	partial			WP_041272543.1	autorepressor SdpR family transcription factor	96.5	71.9	54.9
MGA_2546	LOCUS_25430	sequence1:2682603..2682767(+)	frameshift		2682543	WP_000932073.1	ferrous iron transport protein A	94.4	68.0	68.6
MGA_2547	LOCUS_25440	sequence1:2682760..2684175(+)	frameshift		2684169	WP_000432915.1	ferrous iron transport protein B	99.2	70.5	69.2
MGA_2549	LOCUS_25460	sequence1:2684922..2685242(+)	partial			WP_002485461.1	CDP-glycerol glycerophosphotransferase family protein	94.3	12.9	53.0
MGA_2550	LOCUS_25470	sequence1:2685432..2687366(-)	partial			WP_011203125.1	right-handed parallel beta-helix repeat-containing protein	93.8	44.1	35.9
MGA_2559	LOCUS_25560	sequence1:2697332..2697469(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2566	LOCUS_25630	sequence2:5132..5371(-)	partial			WP_001830605.1	LysR family transcriptional regulator	86.1	23.2	35.3
MGA_2587	LOCUS_25840	sequence2:25555..25983(+)	partial			WP_011837391.1	GNAT family protein	76.8	58.3	39.4
MGA_2590	LOCUS_25870	sequence3:1..189(+)	partial			WP_000277654.1	replication initiation factor domain-containing protein	100.0	19.7	100.0