{ "type": "genome", "identifier": "GCF_029210495.1", "organism": "Defluviimonas nitratireducens", "title": "Defluviimonas nitratireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029210495.1", "bioproject": "PRJNA224116", "biosample": "SAMN33603622", "wgs_master": "JARGDK000000000.1", "refseq_category": "reference genome", "taxid": "1928646", "species_taxid": "1928646", "organism_name": "Defluviimonas nitratireducens", "infraspecific_name": "strain=MCCC 1A06955", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/14", "asm_name": "ASM2921049v1", "asm_submitter": "Hohai University", "gbrs_paired_asm": "GCA_029210495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/210/495/GCF_029210495.1_ASM2921049v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3006268", "genome_size_ungapped": "3006258", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029210495.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3025", "protein_coding_gene_count": "2946", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-14", "dateModified": "2023-03-14", "datePublished": "2023-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Defluviimonas nitratireducens" ], "sample_taxid": [ "1928646" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 80.5477, "matched_fragments": 546, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava sediminum", "strain": "strain=TAW-CT134", "accession": "GCA_002020355.1", "taxid": 1915319, "species_taxid": 1915319, "relation_to_type": "type", "validated": true, "ani": 80.5437, "matched_fragments": 580, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter huangdaonensis", "strain": "strain=CGMCC 1.12963", "accession": "GCA_004022465.1", "taxid": 2501515, "species_taxid": 2501515, "relation_to_type": "type", "validated": true, "ani": 80.4137, "matched_fragments": 550, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, "species_taxid": 1215032, "relation_to_type": "type", "validated": true, "ani": 80.2477, "matched_fragments": 556, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava nitratireducens", "strain": "strain=25B10_4", "accession": "GCA_001940525.2", "taxid": 1915078, "species_taxid": 1915078, "relation_to_type": "type", "validated": true, "ani": 80.1925, "matched_fragments": 571, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter capsulatus", "strain": "strain=DSM 1710", "accession": "GCA_003254295.1", "taxid": 1061, "species_taxid": 1061, "relation_to_type": "type", "validated": true, "ani": 79.6011, "matched_fragments": 504, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter viridis", "strain": "strain=JA737", "accession": "GCA_003217355.1", "taxid": 1054202, "species_taxid": 1054202, "relation_to_type": "type", "validated": true, "ani": 79.5597, "matched_fragments": 500, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 79.3001, "matched_fragments": 466, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 79.2753, "matched_fragments": 462, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter aestuarii", "strain": "strain=DSM 19945", 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1505036, "relation_to_type": "type", "validated": true, "ani": 77.7442, "matched_fragments": 288, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.7069, "matched_fragments": 316, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 77.6486, "matched_fragments": 310, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002358085.1", "gtdb_species": "s__Thioclava arenosa", "ani": 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