{ "type": "genome", "identifier": "GCF_029323795.1", "organism": "Zobellia alginiliquefaciens", "title": "Zobellia alginiliquefaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Station Biologique de Roscoff", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029323795.1", "bioproject": "PRJNA224116", "biosample": "SAMN33610405", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3032586", "species_taxid": "3032586", "organism_name": "Zobellia alginiliquefaciens", "infraspecific_name": "strain=LLG6346-3.1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/21", "asm_name": "ASM2932379v1", "asm_submitter": "Station Biologique de Roscoff", "gbrs_paired_asm": "GCA_029323795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/323/795/GCF_029323795.1_ASM2932379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5066785", "genome_size_ungapped": "5066785", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029323795.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4185", "protein_coding_gene_count": "4123", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-21", "dateModified": "2023-03-21", "datePublished": "2023-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Zobellia alginiliquefaciens" ], "sample_taxid": [ "3032586" ], "sample_host_organism": [ "Ericaria zosteroides (C.Agardh) Molinari & Guiry 2020" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mediterranean Sea: 20 meter-depth near Negru, Corsica, France" ], "sample_host_location_id": [], "data_size": "1.428 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5066785", "Number of Sequences": "1", "Longest Sequences (bp)": "5066785", "N50 (bp)": "5066785", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "4109", "Average Protein Length": "367.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zobellia roscoffensis", "strain": "strain=Asnod1-F08", "accession": "GCA_015330165.1", "taxid": 2779508, 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684, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia galactanivorans", "strain": "strain=DsiJT", "accession": "GCA_000973105.1", "taxid": 63186, "species_taxid": 63186, "relation_to_type": "type", "validated": true, "ani": 79.462, "matched_fragments": 718, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.0605, "matched_fragments": 72, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.8585, "matched_fragments": 209, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.5442, "matched_fragments": 54, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina pacifica", "strain": "strain=SW150", "accession": "GCA_000520955.1", "taxid": 1296415, "species_taxid": 1296415, "relation_to_type": "type", "validated": true, "ani": 76.3705, "matched_fragments": 59, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 76.1903, "matched_fragments": 54, "total_fragments": 1688, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Zobellia", "alginiliquefaciens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }