{ "type": "genome", "identifier": "GCF_029360665.1", "organism": "Eudoraea chungangensis", "title": "Eudoraea chungangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute Of Oceanography,MNR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029360665.1", "bioproject": "PRJNA224116", "biosample": "SAMN33421425", "wgs_master": "JARDUB000000000.1", "refseq_category": "reference genome", "taxid": "1481905", "species_taxid": "1481905", "organism_name": "Eudoraea chungangensis", "infraspecific_name": "strain=KCTC 42048", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/22", "asm_name": "ASM2936066v1", "asm_submitter": "Second Institute Of Oceanography,MNR", "gbrs_paired_asm": "GCA_029360665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/360/665/GCF_029360665.1_ASM2936066v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3725850", "genome_size_ungapped": "3725850", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029360665.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3288", "protein_coding_gene_count": "3234", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-22", "dateModified": "2023-03-22", "datePublished": "2023-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Eudoraea chungangensis" ], "sample_taxid": [ "1481905" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.053 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3725850", "Number of Sequences": "17", "Longest Sequences (bp)": "1052689", "N50 (bp)": "660332", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.2", "Number of CDSs": "3200", "Average Protein Length": "346.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.8682, "matched_fragments": 63, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arenosus", "strain": "strain=CAU 1321", "accession": "GCA_014610845.1", "taxid": 1854708, "species_taxid": 1854708, "relation_to_type": "type", "validated": true, "ani": 77.3391, "matched_fragments": 83, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter luteus", "strain": "strain=RZ05", "accession": "GCA_009674825.1", "taxid": 2594478, "species_taxid": 2594478, "relation_to_type": "type", "validated": true, "ani": 77.049, "matched_fragments": 89, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebyella marina", "strain": "strain=CY01", "accession": "GCA_014855515.1", "taxid": 1761453, "species_taxid": 1761453, "relation_to_type": "type", "validated": true, "ani": 76.9055, 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95, "status": "below_threshold" }, { "organism_name": "Aurantibacter crassamenti", "strain": "strain=HG732", "accession": "GCA_016811105.1", "taxid": 1837375, "species_taxid": 1837375, "relation_to_type": "type", "validated": true, "ani": 76.6973, "matched_fragments": 95, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter hampyeongensis", "strain": "strain=JCM 17788", "accession": "GCA_002909255.1", "taxid": 1028743, "species_taxid": 1028743, "relation_to_type": "type", "validated": true, "ani": 76.686, "matched_fragments": 100, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.6814, "matched_fragments": 121, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.6806, "matched_fragments": 54, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 76.6806, "matched_fragments": 54, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 76.6559, "matched_fragments": 86, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia russellii", "strain": "strain=KMM 3677", "accession": "GCA_018728565.1", "taxid": 248907, "species_taxid": 248907, "relation_to_type": "type", "validated": true, "ani": 76.62, "matched_fragments": 83, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ruestringensis", "strain": "strain=DSM 13258", "accession": "GCA_000224085.1", "taxid": 111501, "species_taxid": 111501, "relation_to_type": "type", "validated": true, "ani": 76.6126, "matched_fragments": 67, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 76.5639, "matched_fragments": 88, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 76.5544, "matched_fragments": 100, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda lutimaris", "strain": "strain=KCTC 22173", "accession": "GCA_003581615.1", "taxid": 475082, "species_taxid": 475082, "relation_to_type": "type", "validated": true, "ani": 76.5355, "matched_fragments": 76, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 76.5062, "matched_fragments": 73, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", 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