{ "type": "genome", "identifier": "GCF_029436685.1", "organism": "Novosphingobium cyanobacteriorum", "title": "Novosphingobium cyanobacteriorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029436685.1", "bioproject": "PRJNA224116", "biosample": "SAMN32935148", "wgs_master": "JAROCY000000000.1", "refseq_category": "reference genome", "taxid": "3024215", "species_taxid": "3024215", "organism_name": "Novosphingobium cyanobacteriorum", "infraspecific_name": "strain=HBC54", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/27", "asm_name": "ASM2943668v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_029436685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/436/685/GCF_029436685.1_ASM2943668v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4801535", "genome_size_ungapped": "4801435", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029436685.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "4469", "protein_coding_gene_count": "4364", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-27", "dateModified": "2023-03-27", "datePublished": "2023-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium cyanobacteriorum" ], "sample_taxid": [ "3024215" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Janggye site" ], "sample_host_location_id": [], "data_size": "1.328 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4801535", "Number of Sequences": "74", "Longest Sequences (bp)": "384963", "N50 (bp)": "187019", "Gap Ratio (%)": "0.002083", "GCcontent (%)": "64.8", "Number of CDSs": "4412", "Average Protein Length": "325.1", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, 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"ani": 81.6379, "matched_fragments": 702, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 81.5529, "matched_fragments": 672, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 81.2992, "matched_fragments": 695, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=NBRC 16086", "accession": "GCA_001598575.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 81.2796, "matched_fragments": 689, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pokkalii", "strain": "strain=KCTC 42224", "accession": "GCA_014652855.1", "taxid": 1770194, "species_taxid": 1770194, "relation_to_type": "type", "validated": true, "ani": 80.9336, "matched_fragments": 688, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium meiothermophilum", "strain": "strain=SYSU G00007", "accession": "GCA_003171715.1", "taxid": 2202251, "species_taxid": 2202251, "relation_to_type": "type", "validated": true, "ani": 80.5442, "matched_fragments": 614, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 80.4514, "matched_fragments": 648, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 80.373, "matched_fragments": 630, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 79.9163, "matched_fragments": 493, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 79.0753, "matched_fragments": 413, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 78.82, "matched_fragments": 402, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.4187, "matched_fragments": 361, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012927405.1", "gtdb_species": "s__Novosphingobium olei", "ani": 82.2332, "matched_fragments": 732, "total_fragments": 1561, "gtdb_taxonomy": 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