{
    "type": "genome",
    "identifier": "GCF_029581355.1",
    "organism": "Parabacteroides chongii",
    "title": "Parabacteroides chongii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Gyeongsang National University Hospital",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029581355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33761826",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2685834",
        "species_taxid": "2685834",
        "organism_name": "Parabacteroides chongii",
        "infraspecific_name": "strain=YMC B3181",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/04/04",
        "asm_name": "ASM2958135v1",
        "asm_submitter": "Gyeongsang National University Hospital",
        "gbrs_paired_asm": "GCA_029581355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/581/355/GCF_029581355.1_ASM2958135v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6031230",
        "genome_size_ungapped": "6031130",
        "gc_percent": "43.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029581355.1-RS_2024_05_13",
        "annotation_date": "2024-05-13",
        "total_gene_count": "4742",
        "protein_coding_gene_count": "4572",
        "non_coding_gene_count": "104",
        "pubmed_id": "30267315"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-04-04",
    "dateModified": "2023-04-04",
    "datePublished": "2023-04-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parabacteroides chongii"
        ],
        "sample_taxid": [
            "2685834"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "colon perforation"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Seoul"
        ],
        "sample_host_location_id": [],
        "data_size": "1.710 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6031130",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "5979380",
        "N50 (bp)": "5979380",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.7",
        "Number of CDSs": "4670",
        "Average Protein Length": "385.5",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "21",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
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                "ani_threshold": 95,
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
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                "accession": "GCA_000428565.1",
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                "total_fragments": 2008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
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                "species_taxid": 46506,
                "relation_to_type": "suspected-type",
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                "total_fragments": 2008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_025151045.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1117,
                "matched_fragments": 547,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides merdae",
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                "accession": "GCA_025151215.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
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                "ani": 79.8262,
                "matched_fragments": 526,
                "total_fragments": 2008,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_003480915.1",
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                "matched_fragments": 1764,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
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            {
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    },
    "_bac2feature": {
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}