{ "type": "genome", "identifier": "GCF_029633825.1", "organism": "Burkholderia contaminans", "title": "Burkholderia contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad de Buenos Aires. Facultad de Farmacia y Bioquimica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029633825.1", "bioproject": "PRJNA224116", "biosample": "SAMN24289055", "wgs_master": "na", "refseq_category": "na", "taxid": "488447", "species_taxid": "488447", "organism_name": "Burkholderia contaminans", "infraspecific_name": "strain=LMG 23361", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/10", "asm_name": "ASM2963382v1", "asm_submitter": "Universidad de Buenos Aires. Facultad de Farmacia y Bioquimica", "gbrs_paired_asm": "GCA_029633825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/633/825/GCF_029633825.1_ASM2963382v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9436857", "genome_size_ungapped": "9436857", "gc_percent": "66.000000", "replicon_count": "7", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029633825.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "8726", "protein_coding_gene_count": "8353", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-10", "dateModified": "2023-04-10", "datePublished": "2023-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia contaminans" ], "sample_taxid": [ "488447" ], "sample_host_organism": [ "sheep" ], "sample_host_organism_id": [], "sample_host_disease": [ "mastitis" ], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "2.563 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9436857", "Number of Sequences": "7", "Longest Sequences (bp)": "3816246", "N50 (bp)": "3261244", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "8730", "Average Protein Length": "310.4", "Coding Ratio (%)": "86.1", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_000987075.1", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", "validated": true, "ani": 99.9902, "matched_fragments": 3063, "total_fragments": 3143, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_001758385.2", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", "validated": true, "ani": 99.967, "matched_fragments": 3025, "total_fragments": 3143, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia lata", "strain": "strain=383", "accession": "GCA_000012945.1", "taxid": 482957, "species_taxid": 482957, "relation_to_type": "suspected-type", "validated": true, "ani": 94.5539, "matched_fragments": 2204, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=CAMPA 1040", "accession": "GCA_002099195.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 93.8948, "matched_fragments": 2207, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=LMG 29660", "accession": "GCA_902859845.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 93.8848, "matched_fragments": 2204, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia aenigmatica", "strain": "strain=LMG 13014", "accession": "GCA_902499175.1", "taxid": 2015348, "species_taxid": 2015348, "relation_to_type": "suspected-type", "validated": true, "ani": 93.6942, "matched_fragments": 2097, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=NBRC 14074", "accession": "GCA_001528845.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.3017, "matched_fragments": 2176, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=UCB 717", "accession": "GCA_001411495.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.2937, "matched_fragments": 2220, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=ATCC 25416", "accession": "GCA_000473485.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.2881, "matched_fragments": 2212, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia metallica", "strain": "strain=LMG 24068", "accession": "GCA_902832845.1", "taxid": 488729, "species_taxid": 488729, "relation_to_type": "type", "validated": true, "ani": 92.9271, "matched_fragments": 2141, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=DSM 10685", "accession": "GCA_001028665.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 92.2129, "matched_fragments": 2139, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=LMG 14191", "accession": "GCA_902832895.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 92.171, "matched_fragments": 2128, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cenocepacia", "strain": "strain=NCTC13227", "accession": "GCA_900446215.1", "taxid": 95486, "species_taxid": 95486, "relation_to_type": "type", "validated": true, "ani": 91.9694, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 83.3457, "matched_fragments": 1417, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 81.0023, "matched_fragments": 1297, "total_fragments": 3143, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000987075.1", "gtdb_species": "s__Burkholderia contaminans", "ani": 99.9902, "matched_fragments": 3063, "total_fragments": 3143, "gtdb_taxonomy": 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