{
    "type": "genome",
    "identifier": "GCF_029675045.1",
    "organism": "Catenibacterium tridentinum",
    "title": "Catenibacterium tridentinum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Trento",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029675045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33794588",
        "wgs_master": "JARNBK000000000.1",
        "refseq_category": "reference genome",
        "taxid": "3035606",
        "species_taxid": "3035606",
        "organism_name": "Catenibacterium tridentinum",
        "infraspecific_name": "strain=CMD8551",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/04/11",
        "asm_name": "ASM2967504v1",
        "asm_submitter": "University of Trento",
        "gbrs_paired_asm": "GCA_029675045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/675/045/GCF_029675045.1_ASM2967504v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2323892",
        "genome_size_ungapped": "2323892",
        "gc_percent": "33.500000",
        "replicon_count": "0",
        "scaffold_count": "113",
        "contig_count": "113",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029675045.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "2367",
        "protein_coding_gene_count": "2247",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-04-11",
    "dateModified": "2023-04-11",
    "datePublished": "2023-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Catenibacterium tridentinum"
        ],
        "sample_taxid": [
            "3035606"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Povo, fraction of Trento"
        ],
        "sample_host_location_id": [],
        "data_size": "0.650 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2323892",
        "Number of Sequences": "113",
        "Longest Sequences (bp)": "105579",
        "N50 (bp)": "44791",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.7",
        "Number of CDSs": "2262",
        "Average Protein Length": "300.3",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Catenibacterium mitsuokai",
                "strain": "strain=DSM 15897",
                "accession": "GCA_025148785.1",
                "taxid": 100886,
                "species_taxid": 100886,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.4871,
                "matched_fragments": 615,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kandleria vitulina",
                "strain": "strain=DSM 20405",
                "accession": "GCA_000702065.1",
                "taxid": 1630,
                "species_taxid": 1630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4354,
                "matched_fragments": 147,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kandleria vitulina",
                "strain": "strain=DSM 20405",
                "accession": "GCA_001436965.1",
                "taxid": 1630,
                "species_taxid": 1630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1934,
                "matched_fragments": 146,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sharpea azabuensis",
                "strain": "strain=DSM 18934",
                "accession": "GCA_000702165.1",
                "taxid": 322505,
                "species_taxid": 322505,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0914,
                "matched_fragments": 131,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibaculum porci",
                "strain": "strain=SG0102",
                "accession": "GCA_003925875.1",
                "taxid": 2487118,
                "species_taxid": 2487118,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.046,
                "matched_fragments": 105,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_004343035.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2359,
                "matched_fragments": 131,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "",
                "accession": "GCA_900660185.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1568,
                "matched_fragments": 70,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_024622235.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1434,
                "matched_fragments": 131,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=RCA1-24",
                "accession": "GCA_009767585.1",
                "taxid": 100884,
                "species_taxid": 100884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9325,
                "matched_fragments": 92,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthia catenaformis",
                "strain": "strain=OT 569",
                "accession": "GCA_000340375.1",
                "taxid": 31973,
                "species_taxid": 31973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8273,
                "matched_fragments": 97,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthia catenaformis",
                "strain": "strain=DSM 20559",
                "accession": "GCA_000422605.1",
                "taxid": 31973,
                "species_taxid": 31973,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7279,
                "matched_fragments": 97,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004168205.1",
                "gtdb_species": "s__Catenibacterium sp000437715",
                "ani": 96.6569,
                "matched_fragments": 544,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.64",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 29,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000173795.1",
                "gtdb_species": "s__Catenibacterium mitsuokai",
                "ani": 93.6131,
                "matched_fragments": 570,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "96.27",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900540665.1",
                "gtdb_species": "s__Catenibacterium sp900540665",
                "ani": 92.9716,
                "matched_fragments": 550,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900540685.1",
                "gtdb_species": "s__Catenibacterium sp900540685",
                "ani": 92.9188,
                "matched_fragments": 557,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900764725.1",
                "gtdb_species": "s__Catenibacterium sp900764725",
                "ani": 92.4783,
                "matched_fragments": 503,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900764565.1",
                "gtdb_species": "s__Catenibacterium sp900764565",
                "ani": 91.7311,
                "matched_fragments": 465,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Catenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2671313.0,
        "gc_content": 36.817,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Catenibacterium",
        "tridentinum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}