{
    "type": "genome",
    "identifier": "GCF_029773685.1",
    "organism": "Actinobacillus equuli subsp. equuli",
    "title": "Actinobacillus equuli subsp. equuli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universiteit Gent",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029773685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30522506",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "202947",
        "species_taxid": "718",
        "organism_name": "Actinobacillus equuli subsp. equuli",
        "infraspecific_name": "strain=CCUG2041",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/04/17",
        "asm_name": "ASM2977368v1",
        "asm_submitter": "Universiteit Gent",
        "gbrs_paired_asm": "GCA_029773685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/773/685/GCF_029773685.1_ASM2977368v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2424936",
        "genome_size_ungapped": "2424936",
        "gc_percent": "40.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029773685.1-RS_2024_04_16",
        "annotation_date": "2024-04-16",
        "total_gene_count": "2277",
        "protein_coding_gene_count": "2165",
        "non_coding_gene_count": "85",
        "pubmed_id": "37020296"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-04-17",
    "dateModified": "2023-04-17",
    "datePublished": "2023-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinobacillus equuli subsp. equuli"
        ],
        "sample_taxid": [
            "202947"
        ],
        "sample_host_organism": [
            "horse"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.681 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2424936",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2424936",
        "N50 (bp)": "2424936",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "2219",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "19",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Actinobacillus equuli",
                "strain": "strain=NCTC8529",
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                "species_taxid": 718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9942,
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                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinobacillus suis",
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                "accession": "GCA_900187155.1",
                "taxid": 716,
                "species_taxid": 716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7583,
                "matched_fragments": 717,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus suis",
                "strain": "strain=ATCC 33415",
                "accession": "GCA_000739435.1",
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                "species_taxid": 716,
                "relation_to_type": "type",
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                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus capsulatus",
                "strain": "strain=DSM 19761",
                "accession": "GCA_000374285.1",
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                "species_taxid": 717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1492,
                "matched_fragments": 685,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus ureae",
                "strain": "strain=ATCC 25976",
                "accession": "GCA_000188255.1",
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                "species_taxid": 723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8227,
                "matched_fragments": 653,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus pleuropneumoniae",
                "strain": "strain=S4074",
                "accession": "GCA_003290385.1",
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                "species_taxid": 715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2594,
                "matched_fragments": 600,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinobacillus lignieresii",
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                "accession": "GCA_900444945.1",
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                "species_taxid": 720,
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                "status": "below_threshold"
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            {
                "organism_name": "Actinobacillus pleuropneumoniae",
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                "accession": "GCA_000167095.1",
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                "matched_fragments": 548,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium sanguinicancri",
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                "accession": "GCA_024346675.1",
                "taxid": 875932,
                "species_taxid": 875932,
                "relation_to_type": "type",
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                "ani": 78.9677,
                "matched_fragments": 50,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Otariodibacter oris",
                "strain": "strain=Baika1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9405,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter haemolyticus",
                "strain": "strain=DSM 111151",
                "accession": "GCA_015356115.1",
                "taxid": 2778911,
                "species_taxid": 2778911,
                "relation_to_type": "type",
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                "matched_fragments": 159,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio porteresiae",
                "strain": "strain=MSSRF30",
                "accession": "GCA_024347055.1",
                "taxid": 435912,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2811,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Otariodibacter oris",
                "strain": "strain=DSM 23800",
                "accession": "GCA_003634665.1",
                "taxid": 1032623,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900636745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.17,
        "cell_length": 0.02,
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        "growth_tmp": 37.0,
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        "rRNA16S_genes": 6.0,
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    "_genome_taxon": [
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        "equuli",
        "subsp.",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}