{
    "type": "genome",
    "identifier": "GCF_029814255.1",
    "organism": "Enterococcus hirae",
    "title": "Enterococcus hirae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_029814255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN34126596",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1354",
        "species_taxid": "1354",
        "organism_name": "Enterococcus hirae",
        "infraspecific_name": "strain=DSM 20160",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/04/18",
        "asm_name": "ASM2981425v1",
        "asm_submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "GCA_029814255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/814/255/GCF_029814255.1_ASM2981425v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2943991",
        "genome_size_ungapped": "2943991",
        "gc_percent": "37.000000",
        "replicon_count": "6",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_029814255.1-RS_2024_04_17",
        "annotation_date": "2024-04-17",
        "total_gene_count": "2832",
        "protein_coding_gene_count": "2641",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-04-18",
    "dateModified": "2023-04-18",
    "datePublished": "2023-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Enterococcus hirae"
        ],
        "sample_taxid": [
            "1354"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Zhenjiang"
        ],
        "sample_host_location_id": [],
        "data_size": "0.826 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2943991",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "2743374",
        "N50 (bp)": "2743374",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.0",
        "Number of CDSs": "2785",
        "Average Protein Length": "292.0",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "18",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Enterococcus hirae",
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                "accession": "GCA_000271405.2",
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                "species_taxid": 1354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7073,
                "matched_fragments": 824,
                "total_fragments": 978,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus hirae",
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                "species_taxid": 1354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6343,
                "matched_fragments": 827,
                "total_fragments": 978,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus hirae",
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                "accession": "GCA_001885955.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6337,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus hirae",
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                "accession": "GCA_016766815.1",
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                "species_taxid": 1354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5919,
                "matched_fragments": 832,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus hirae",
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                "accession": "GCA_000407425.1",
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                "species_taxid": 1354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5846,
                "matched_fragments": 825,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterococcus lactis",
                "strain": "strain=CCM 8412",
                "accession": "GCA_015751045.1",
                "taxid": 357441,
                "species_taxid": 357441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1644,
                "matched_fragments": 421,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterococcus alishanensis",
                "strain": "strain=ALS3",
                "accession": "GCA_019218635.1",
                "taxid": 1303817,
                "species_taxid": 1303817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3776,
                "matched_fragments": 115,
                "total_fragments": 978,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_000271405.2",
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                "total_fragments": 978,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 203,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015680865.1",
                "gtdb_species": "s__Enterococcus_B lacertideformus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001544215.1",
                "gtdb_species": "s__Enterococcus_B durans",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 135,
                "status": "-"
            },
            {
                "accession": "GCF_007990225.1",
                "gtdb_species": "s__Enterococcus_B villorum",
                "ani": 82.0272,
                "matched_fragments": 535,
                "total_fragments": 978,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001886195.1",
                "gtdb_species": "s__Enterococcus_B ratti",
                "ani": 80.8084,
                "matched_fragments": 442,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002140175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
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                "mean_intra_species_ani": "99.33",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001544255.1",
                "gtdb_species": "s__Enterococcus_B faecium",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B",
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            },
            {
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            },
            {
                "accession": "GCF_002813755.1",
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            },
            {
                "accession": "GCF_017316305.1",
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            },
            {
                "accession": "GCF_017316125.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "rRNA16S_genes": 6.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "hirae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}