{ "type": "genome", "identifier": "GCF_029823155.1", "organism": "Leuconostoc falkenbergense", "title": "Leuconostoc falkenbergense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chr-Hansen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_029823155.1", "bioproject": "PRJNA224116", "biosample": "SAMN33225766", "wgs_master": "JARACB000000000.1", "refseq_category": "na", "taxid": "2766470", "species_taxid": "2766470", "organism_name": "Leuconostoc falkenbergense", "infraspecific_name": "strain=LMG 10779", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/18", "asm_name": "ASM2982315v1", "asm_submitter": "Chr-Hansen", "gbrs_paired_asm": "GCA_029823155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/823/155/GCF_029823155.1_ASM2982315v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1969745", "genome_size_ungapped": "1969596", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "122", "contig_count": "122", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_029823155.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "2085", "protein_coding_gene_count": "1958", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-18", "dateModified": "2023-04-18", "datePublished": "2023-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Leuconostoc falkenbergense" ], "sample_taxid": [ "2766470" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1969745", "Number of Sequences": "122", "Longest Sequences (bp)": "174475", "N50 (bp)": "39332", "Gap Ratio (%)": "0.008732", "GCcontent (%)": "39.0", "Number of CDSs": "1969", "Average Protein Length": "289.3", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leuconostoc falkenbergense", "strain": "strain=LMG 10779", "accession": "GCA_014634805.1", "taxid": 2766470, "species_taxid": 2766470, "relation_to_type": "type", "validated": true, "ani": 99.6273, "matched_fragments": 550, "total_fragments": 604, "ani_threshold": 95, 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"below_threshold" }, { "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides", "strain": "strain=NBRC 100496", "accession": "GCA_007990165.1", "taxid": 33967, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 80.5724, "matched_fragments": 197, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc mesenteroides subsp. jonggajibkimchii", "strain": "strain=DRC1506", "accession": "GCA_001886915.1", "taxid": 2026657, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 80.4828, "matched_fragments": 199, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc kimchii", "strain": "strain=IMSNU 11154", "accession": "GCA_000092505.1", "taxid": 136609, "species_taxid": 136609, "relation_to_type": "type", "validated": true, "ani": 80.3393, "matched_fragments": 181, "total_fragments": 604, "ani_threshold": 95, "status": 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"organism_name": "Leuconostoc gelidum subsp. gasicomitatum", "strain": "strain=type strain: LMG 18811", "accession": "GCA_000196855.1", "taxid": 115778, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 78.9226, "matched_fragments": 150, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014634805.1", "gtdb_species": "s__Leuconostoc falkenbergense", "ani": 99.6273, "matched_fragments": 550, "total_fragments": 604, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "96.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 34, "status": "conclusive" }, { "accession": "GCF_014634745.1", "gtdb_species": 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80.7566, "matched_fragments": 207, "total_fragments": 604, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000092505.1", "gtdb_species": "s__Leuconostoc kimchii", "ani": 80.3434, "matched_fragments": 182, "total_fragments": 604, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001891125.1", "gtdb_species": "s__Leuconostoc suionicum", "ani": 80.232, "matched_fragments": 208, "total_fragments": 604, 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"vibrio_cell_shape": 0.09, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Leuconostoc", "falkenbergense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }