{ "type": "genome", "identifier": "GCF_030010415.1", "organism": "Cobetia amphilecti", "title": "Cobetia amphilecti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "G.B. Elyakov Pacific Institute of Bioorganic Chemistry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030010415.1", "bioproject": "PRJNA224116", "biosample": "SAMN34085106", "wgs_master": "JASCSA000000000.1", "refseq_category": "na", "taxid": "1055104", "species_taxid": "1055104", "organism_name": "Cobetia amphilecti", "infraspecific_name": "strain=NRIC 0815", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/05/13", "asm_name": "ASM3001041v1", "asm_submitter": "G.B. Elyakov Pacific Institute of Bioorganic Chemistry", "gbrs_paired_asm": "GCA_030010415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/010/415/GCF_030010415.1_ASM3001041v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4171304", "genome_size_ungapped": "4171304", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030010415.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "3615", "protein_coding_gene_count": "3514", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-05-13", "dateModified": "2023-05-13", "datePublished": "2023-05-13", "_annotation": { 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"_dfastqc": { "tc_result": [ { "organism_name": "Cobetia marina", "strain": "strain=JCM 21022", "accession": "GCA_001720485.1", "taxid": 28258, "species_taxid": 28258, "relation_to_type": "type", "validated": true, "ani": 88.7073, "matched_fragments": 1163, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cobetia crustatorum", "strain": "strain=JO1", "accession": "GCA_000591415.1", "taxid": 553385, "species_taxid": 553385, "relation_to_type": "type", "validated": true, "ani": 84.3678, "matched_fragments": 933, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 79.9933, "matched_fragments": 467, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 79.8537, "matched_fragments": 490, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 79.4199, "matched_fragments": 487, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas borealis", "strain": "strain=ATF 5.2", "accession": "GCA_004798905.1", "taxid": 2508710, "species_taxid": 2508710, "relation_to_type": "type", "validated": true, "ani": 79.2531, "matched_fragments": 429, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 79.1949, "matched_fragments": 436, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas litopenaei", "strain": "strain=SYSU ZJ2214", "accession": "GCA_003045775.1", "taxid": 2109328, "species_taxid": 2109328, "relation_to_type": "type", "validated": true, "ani": 79.1168, "matched_fragments": 456, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 79.1002, "matched_fragments": 433, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, 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78.9123, "matched_fragments": 465, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 78.9093, "matched_fragments": 452, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 78.8391, "matched_fragments": 419, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 78.8307, "matched_fragments": 439, 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