{ "type": "genome", "identifier": "GCF_030035605.1", "organism": "Silvimonas soli", "title": "Silvimonas soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Chemistry and Technology, Prague", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030035605.1", "bioproject": "PRJNA224116", "biosample": "SAMN30949746", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2980100", "species_taxid": "2980100", "organism_name": "Silvimonas soli", "infraspecific_name": "strain=17-6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/05/18", "asm_name": "ASM3003560v1", "asm_submitter": "University of Chemistry and Technology, Prague", "gbrs_paired_asm": "GCA_030035605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/035/605/GCF_030035605.1_ASM3003560v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4508233", "genome_size_ungapped": "4508233", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030035605.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4155", "protein_coding_gene_count": "4051", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-05-18", "dateModified": "2023-05-18", "datePublished": "2023-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Silvimonas soli" ], "sample_taxid": [ "2980100" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Norrbyscar" ], "sample_host_location_id": [], "data_size": "1.267 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4508233", "Number of Sequences": "1", "Longest Sequences (bp)": "4508233", "N50 (bp)": "4508233", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "4128", "Average Protein Length": "313.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "15", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Silvimonas iriomotensis", "strain": "strain=CGMCC 1.8859", "accession": "GCA_014645535.1", "taxid": 449662, "species_taxid": 449662, "relation_to_type": "type", "validated": true, "ani": 81.0133, "matched_fragments": 897, "total_fragments": 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