{
    "type": "genome",
    "identifier": "GCF_030035795.1",
    "organism": "Clostridioides difficile",
    "title": "Clostridioides difficile",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Manipal Academy of Higher Education",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030035795.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN26981362",
        "wgs_master": "JALGRY000000000.1",
        "refseq_category": "na",
        "taxid": "1496",
        "species_taxid": "1496",
        "organism_name": "Clostridioides difficile",
        "infraspecific_name": "strain=MALS003",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/05/18",
        "asm_name": "ASM3003579v1",
        "asm_submitter": "Manipal Academy of Higher Education",
        "gbrs_paired_asm": "GCA_030035795.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/035/795/GCF_030035795.1_ASM3003579v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4403852",
        "genome_size_ungapped": "4403852",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "132",
        "contig_count": "132",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-29",
        "total_gene_count": "4144",
        "protein_coding_gene_count": "3972",
        "non_coding_gene_count": "86",
        "pubmed_id": "37195730"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-05-18",
    "dateModified": "2023-05-18",
    "datePublished": "2023-05-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridioides difficile"
        ],
        "sample_taxid": [
            "1496"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Karnataka"
        ],
        "sample_host_location_id": [],
        "data_size": "1.195 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4403852",
        "Number of Sequences": "132",
        "Longest Sequences (bp)": "341676",
        "N50 (bp)": "187823",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.7",
        "Number of CDSs": "4042",
        "Average Protein Length": "299.6",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "15"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Clostridioides difficile",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Clostridioides difficile",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Clostridioides difficile",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
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                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 348,
                "total_fragments": 1404,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=DSM 797",
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                "relation_to_type": "type",
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                "ani": 78.6467,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia weinsteinii",
                "strain": "strain=CCRI-19649",
                "accession": "GCA_002250835.2",
                "taxid": 2020949,
                "species_taxid": 2020949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3287,
                "matched_fragments": 367,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia timonensis",
                "strain": "strain=Marseille-P326",
                "accession": "GCA_900106845.1",
                "taxid": 1776391,
                "species_taxid": 1776391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2259,
                "matched_fragments": 320,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=ATCC 638",
                "accession": "GCA_006802875.1",
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                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0481,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium dentum",
                "strain": "strain=SKVG24",
                "accession": "GCA_012922555.1",
                "taxid": 2662455,
                "species_taxid": 2662455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8911,
                "matched_fragments": 312,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001077535.1",
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                "total_fragments": 1404,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
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                "mean_intra_species_ani": "98.86",
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                "num_clustered_genomes": 2225,
                "status": "conclusive"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
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                "num_clustered_genomes": 2,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001299635.1",
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            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}