{
    "type": "genome",
    "identifier": "GCF_030062355.1",
    "organism": "Methylosinus trichosporium OB3b",
    "title": "Methylosinus trichosporium OB3b",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "South Dakota School of Mines and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030062355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN33744835",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "595536",
        "species_taxid": "426",
        "organism_name": "Methylosinus trichosporium OB3b",
        "infraspecific_name": "strain=OB3b",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/05/22",
        "asm_name": "ASM3006235v1",
        "asm_submitter": "South Dakota School of Mines and Technology",
        "gbrs_paired_asm": "GCA_030062355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/062/355/GCF_030062355.1_ASM3006235v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5182668",
        "genome_size_ungapped": "5182668",
        "gc_percent": "66.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030062355.1-RS_2024_05_22",
        "annotation_date": "2024-05-22",
        "total_gene_count": "4817",
        "protein_coding_gene_count": "4580",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-05-22",
    "dateModified": "2023-05-22",
    "datePublished": "2023-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylosinus trichosporium OB3b"
        ],
        "sample_taxid": [
            "595536"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rapid City, SD"
        ],
        "sample_host_location_id": [],
        "data_size": "1.400 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5182668",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "4507548",
        "N50 (bp)": "4507548",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.8",
        "Number of CDSs": "4770",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methylosinus trichosporium",
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                "matched_fragments": 1650,
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                "status": "conclusive"
            },
            {
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                "status": "below_threshold"
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            {
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                "ani": 83.5429,
                "matched_fragments": 854,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis parvus",
                "strain": "strain=OBBP",
                "accession": "GCA_000283235.1",
                "taxid": 134,
                "species_taxid": 134,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2335,
                "matched_fragments": 576,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis heyeri",
                "strain": "strain=H2",
                "accession": "GCA_004802635.2",
                "taxid": 391905,
                "species_taxid": 391905,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis silviterrae",
                "strain": "strain=FS",
                "accession": "GCA_013350005.1",
                "taxid": 2743612,
                "species_taxid": 2743612,
                "relation_to_type": "type",
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                "matched_fragments": 519,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidatus Rhodoblastus alkanivorans",
                "strain": "",
                "accession": "GCA_022760755.1",
                "taxid": 2954117,
                "species_taxid": 2954117,
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                "matched_fragments": 398,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saliniramus fredricksonii",
                "strain": "strain=HL-109",
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                "species_taxid": 1653334,
                "relation_to_type": "type",
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                "ani": 76.8342,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
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                "species_taxid": 2583531,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
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                "accession": "GCA_022179325.1",
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                "species_taxid": 315478,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinarimonas ramus",
                "strain": "strain=CGMCC 1.9161",
                "accession": "GCA_014645695.1",
                "taxid": 690164,
                "species_taxid": 690164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5742,
                "matched_fragments": 418,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_002752655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylosinus",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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}