{ "type": "genome", "identifier": "GCF_030159975.1", "organism": "Sulfitobacter pacificus", "title": "Sulfitobacter pacificus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030159975.1", "bioproject": "PRJNA224116", "biosample": "SAMD00235827", "wgs_master": "BSNL00000000.1", "refseq_category": "reference genome", "taxid": "1499314", "species_taxid": "1499314", "organism_name": "Sulfitobacter pacificus", "infraspecific_name": "strain=NBRC 109915", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/15", "asm_name": "ASM3015997v1", "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "gbrs_paired_asm": "GCA_030159975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/159/975/GCF_030159975.1_ASM3015997v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4386849", "genome_size_ungapped": "4386849", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030159975.1-RS_2024_06_03", "annotation_date": "2024-06-03", "total_gene_count": "4320", "protein_coding_gene_count": "4236", "non_coding_gene_count": "48", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-15", "dateModified": "2023-02-15", "datePublished": "2023-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter pacificus" ], "sample_taxid": [ "1499314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.238 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4386849", "Number of Sequences": "25", "Longest Sequences (bp)": "3548083", "N50 (bp)": "3548083", "Gap Ratio (%)": "0.000046", "GCcontent (%)": "57.5", "Number of CDSs": "4325", "Average Protein Length": "305.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "4", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, 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1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter brevis", "strain": "strain=DSM 11443", "accession": "GCA_900112755.1", "taxid": 74348, "species_taxid": 74348, "relation_to_type": "type", "validated": true, "ani": 77.8552, "matched_fragments": 438, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Donghicola tyrosinivorans", "strain": "strain=DSM 100212", "accession": "GCA_003003355.1", "taxid": 1652492, "species_taxid": 1652492, "relation_to_type": "type", "validated": true, "ani": 77.2786, "matched_fragments": 195, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0871, "matched_fragments": 334, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 77.0612, "matched_fragments": 266, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 77.0103, "matched_fragments": 170, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.7888, "matched_fragments": 195, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.6777, "matched_fragments": 169, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.2068, "matched_fragments": 168, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.2068, "matched_fragments": 168, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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