{ "type": "genome", "identifier": "GCF_030160215.1", "organism": "Vibrio penaeicida", "title": "Vibrio penaeicida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160215.1", "bioproject": "PRJNA224116", "biosample": "SAMD00238649", "wgs_master": "BSNX00000000.1", "refseq_category": "na", "taxid": "104609", "species_taxid": "104609", "organism_name": "Vibrio penaeicida", "infraspecific_name": "strain=NBRC 15640", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/16", "asm_name": "ASM3016021v1", "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "gbrs_paired_asm": "GCA_030160215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/215/GCF_030160215.1_ASM3016021v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6670746", "genome_size_ungapped": "6668560", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160215.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "5929", "protein_coding_gene_count": "5788", "non_coding_gene_count": "79", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-16", "dateModified": "2023-02-16", "datePublished": "2023-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio penaeicida" ], "sample_taxid": [ "104609" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6670746", "Number of Sequences": "75", "Longest Sequences (bp)": "967114", "N50 (bp)": "276085", "Gap Ratio (%)": "0.032770", "GCcontent (%)": "43.8", "Number of CDSs": "5845", "Average Protein Length": "330.3", "Coding Ratio (%)": "86.8", "Number of rRNAs": "4", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, 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95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 79.4445, "matched_fragments": 316, "total_fragments": 2191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.431, "matched_fragments": 294, "total_fragments": 2191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_024347655.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 79.3458, "matched_fragments": 274, "total_fragments": 2191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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